View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_low_8 (Length: 574)
Name: NF15415_low_8
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 20 - 570
Target Start/End: Original strand, 45667532 - 45668086
Alignment:
| Q |
20 |
gtctggtaagataggatgcagaactgcaatttagaggacagcgtatttgggcagctgcaatggaagatttgatgtcaaagggaatgcattttgcaaatca |
119 |
Q |
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| T |
45667532 |
gtctggtaagataggatgcagaactgcaatttagaggacagcgtatttgggcagctgcaatggaagatttgatatcaaagggaatgcattttgctaatca |
45667631 |
T |
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| Q |
120 |
agctcttctttccggatgttccgcgggtggcctagcaactattatacactgcgatgaatttcgaggtctctttccaaggactactaaagtgaagtgtcta |
219 |
Q |
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| T |
45667632 |
agctcttctttccggatgttccgctggtggcctagcaactattatacactgcgatgaatttcgaggtctctttccaaggactactaaagtgaagtgtcta |
45667731 |
T |
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| Q |
220 |
agcgatgcagggttgtttcttgattcgtaagc----aacaaacaaacaaactacattatttcatgctttcagtgccatttctaccatcactacnnnnnnn |
315 |
Q |
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| T |
45667732 |
agcgatgcagggttgtttcttgattcgtaagcaacaaacaaacaaacaaactacattatttcatgctttcagtgccatttctacaatcactacaaaaaaa |
45667831 |
T |
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| Q |
316 |
nttaatctttagttacttattaatttctgtttgcattgaaattataggattgatatatctggtgagcgcaccctccggaatatgtacaatggtgttgtag |
415 |
Q |
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| T |
45667832 |
attaatctttagttacttattaatttctgtttgcattgaaattataggattgatatatctggtgagcgcaccctccggaatatgtacaatggtgttgtag |
45667931 |
T |
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| Q |
416 |
ggatgcaggtaccgcgcactaaccacaaggataccaatttattacaaatagtttatattctttcatggctatgttatttaacaaggttgcaacatttgta |
515 |
Q |
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| T |
45667932 |
ggatgcaggtaccgcacactaaccacaaggaaaccaatttattacaaatagtttatattctttcatggctatgttatttaacaaggttgcaacatttgta |
45668031 |
T |
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| Q |
516 |
aggcatgctgagaattatttgtttgatcattgtaggaagcacagaataatctacc |
570 |
Q |
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| T |
45668032 |
aggcatgctgagaattatttgtttgatcattgtaggaagcacagaagaatctacc |
45668086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 37972667 - 37972548
Alignment:
| Q |
121 |
gctcttctttccggatgttccgcgggtggcctagcaactattatacactgcgatgaatttcgaggtctctttccaaggactactaaagtgaagtgtctaa |
220 |
Q |
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||||||||||| ||||| || || ||||| || || |||||| |||||||||||||||||||||||| || ||||||||||| ||||||||||| || | |
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| T |
37972667 |
gctcttctttctggatgctcagctggtggtcttgctactattttacactgcgatgaatttcgaggtcatttcccaaggactaccaaagtgaagtgcctca |
37972568 |
T |
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| Q |
221 |
gcgatgcagggttgtttctt |
240 |
Q |
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| T |
37972567 |
gtgatgctgggttatttctt |
37972548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 37972826 - 37972757
Alignment:
| Q |
44 |
tgcaatttagaggacagcgtatttgggcagctgcaatggaagatttgatgtcaaagggaatgcattttgc |
113 |
Q |
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||||||| ||||||||||| |||||| |||||| |||| |||||||||||||| ||||||| |||||| |
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| T |
37972826 |
tgcaattcagaggacagcgcatttggttggctgcagtggaggatttgatgtcaaaaggaatgcgttttgc |
37972757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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