View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15415_low_9 (Length: 564)
Name: NF15415_low_9
Description: NF15415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15415_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Complemental strand, 1687444 - 1686886
Alignment:
| Q |
1 |
gtcaaactttacgtcgactttcaacaatggccgttcataaagaactaattctcctgattttttacggacatttctcttattttcctttcgatgtannnnn |
100 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1687444 |
gtcaaactttacattgactttcaacaatggccgttcataaagaactaattctcctgattttttacggacatttctcttatttgcctttcgatgtattttt |
1687345 |
T |
|
| Q |
101 |
nnattcgaggaaataatcttcttgattatagttttcatttttcggctgattgtagtagaatttccttctacgtagaaatctttccaacatttcctcttcc |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1687344 |
ttatttgaggaaataatcttcttgattatagttttcatttttcggctgattgtagtagaatttccttctacgtagaaatctttccaacatttcctcttcc |
1687245 |
T |
|
| Q |
201 |
taataaaagtttttgatctactaccctttgcaaaagggttcaagagttttaccaaatttattctttctctttttactcttttcctcttacacattattgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1687244 |
taataaaagtttttgatctactaccctttgcaaaagggttcaagagttttaccaaatttattctttctctttttactcttttcctcttacacattattgg |
1687145 |
T |
|
| Q |
301 |
aaaatttcc-ccaattcttctattctcaacaagacataaagatgacaatgaagtcattttttggtaactttgtagtgaattgtattcgatagcatataca |
399 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1687144 |
aaaatttcctccaattcttctattctcaacaagacataaagatgacaatgaagtcattttttggtaactttgtagtgaattgtattcgatagcagataca |
1687045 |
T |
|
| Q |
400 |
ttagttatggttgaactctcaaatccactcttctcaatctttgtattgttgaaattttccaaaaatggtaaagagatggaatttccatcatcaacaaata |
499 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1687044 |
ttagttatggttgaactctcaaatccactcttctcaatctttgtattgttgaaatttaacaaaaatggtaaagagatggaatttccatcatcaacaaata |
1686945 |
T |
|
| Q |
500 |
atggtcgttgacactcagaagtcttagcactctttctaacataacttttcctatgcttc |
558 |
Q |
| |
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|
| T |
1686944 |
atggtcgttgacactcacaagtcttagcactctttctaacataacttttcctctgcttc |
1686886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 4e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 37 - 551
Target Start/End: Complemental strand, 41918529 - 41918017
Alignment:
| Q |
37 |
ataaagaactaattctcctgattttttacggacatttctcttattttcctttcgatgtannnnnnnattcgaggaaataatcttcttgattatagttttc |
136 |
Q |
| |
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||||||||||||||| ||||| ||||| ||||||| ||||||||||| ||||||||| | ||| |||||||||| |||||||||| || | || |
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| T |
41918529 |
ataaagaactaattcccctgactttttgcggacatctctcttatttttctttcgatgcatttttttcttcaaggaaataattttcttgattaaagatctc |
41918430 |
T |
|
| Q |
137 |
atttttcggctgattgtagtagaatttccttctacgtagaaatctttccaacatttcctcttcctaataaaagtttttgatctactaccctttgcaaaag |
236 |
Q |
| |
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|||||||||||| |||||| ||||||||||| | | || | | |||||||||| |||||| ||| |||| |||||||||| ||||||||||| | |
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| T |
41918429 |
atttttcggctggttgtag---aatttccttctgcccaaaattgtgtccaacattttctcttcgtaacaaaactttttgatctctggccctttgcaaacg |
41918333 |
T |
|
| Q |
237 |
ggttcaagagttttaccaaatttattctttctctttttactcttttcctcttacacattattggaaaatttcc-ccaattcttctattctcaacaagaca |
335 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||| |||||||| ||| ||||||| ||||| |
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| T |
41918332 |
ggggcaagagttttaccaaacttattctttctcttctaactcttttccttttacacattattggaaaattttgtccaattctcctactctcaactagaca |
41918233 |
T |
|
| Q |
336 |
taaagatgacaatgaagtcattttttggtaactttgtagtgaattgtattcgatagcatatacattagttatggttgaactctcaaatccactcttctca |
435 |
Q |
| |
|
|||| ||||||||||| |||||| || |||||||||| ||||||||| |||| || || |||||||||| |||||| | |||||||||| || | | |
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| T |
41918232 |
taaacctgacaatgaagacattttctgataactttgtaccgaattgtatacgatgccagattcattagttatagttgaattttcaaatccaccctgataa |
41918133 |
T |
|
| Q |
436 |
atctttgtattgttgaaattttccaaaaatggtaaagagatggaatttccatcatcaacaaataatggtcgttgacactcagaagtcttagcactctttc |
535 |
Q |
| |
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| ||||| || ||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||| | |||| ||| |||||| |
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| T |
41918132 |
acctttgaatctttgaaatattccaaaaatgggaaagagatggaatctccatcatcgacaaataatggcttttgacactcaggaatcttggcagtctttc |
41918033 |
T |
|
| Q |
536 |
taacataacttttcct |
551 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
41918032 |
taacataacttttcct |
41918017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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