View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15416_high_13 (Length: 243)
Name: NF15416_high_13
Description: NF15416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15416_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 16813281 - 16813116
Alignment:
| Q |
1 |
tttaaattttaataatcagaataaattacgaatacaattgagtaatttaacaatatattcttcatttatattgtttttgtattgttttatatgatgttac |
100 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16813281 |
tttaaattttaatactcagaatgaattacgaatacaattgagtaatttaacaatatattcttcatttatattgcttttgtattgttttatatgatgttac |
16813182 |
T |
|
| Q |
101 |
atgaatcacctacaaaagagaaacaattgaaatcaacttttctaggaacataaactatttattttg |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16813181 |
atgaatcacctacaaaagagaaacaattgaaatcaacttttctaggaacataaactatttattttg |
16813116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University