View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15416_high_3 (Length: 483)
Name: NF15416_high_3
Description: NF15416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15416_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 6157557 - 6157710
Alignment:
| Q |
18 |
ctttgaaagctcttgaaaactaaacctagttgctaccttattgctttgatagcttctcacactcttcccctttccctctgcaaatatgatccaataacca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6157557 |
ctttgaaagctcttgaaaactaaacctagttgctaccttattgctttgatagcttctcacactcttcccctttccctctgcaaatatgatccaataacca |
6157656 |
T |
|
| Q |
118 |
aaatcatcattctttccaaacaaaacaaaaacatatagtaattactaaggtaac |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6157657 |
aaatcatcattctttccaaacaaaacaaaaacatatagtaattactaaggtaac |
6157710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 275 - 483
Target Start/End: Original strand, 6157814 - 6158020
Alignment:
| Q |
275 |
gatttacttgaatttgaaaaccattatttatcggtacctgatgtgtttgttcctccattctttttccaacaacaaacaaagccagaaaaacaactcatat |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6157814 |
gatttacttgaatttgaaaaccattatttatcggtacctgatgtgtttgttcctccattctttttccaacaataaacaaagccagaaaaacaactcatat |
6157913 |
T |
|
| Q |
375 |
ctcctacaatcacaaccaactacacagagagaagatgagagtgaacacacaannnnnnnnnctctttgtctcgagaattgtagtgnnnnnnntattatca |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
6157914 |
ctcctacaatcacaaccaactacacagagagaagatgagagtgaacacacaa--tttttttctctttgtctcgagaattgtagtgaaaaaaatattatca |
6158011 |
T |
|
| Q |
475 |
ctacaccga |
483 |
Q |
| |
|
||||||||| |
|
|
| T |
6158012 |
ctacaccga |
6158020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University