View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15416_high_5 (Length: 435)
Name: NF15416_high_5
Description: NF15416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15416_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 34330829 - 34331100
Alignment:
| Q |
13 |
aaaatgagtgttgtgtaattatatataagtgagaggaccataaaatcaatgtattgaggttttgagttaagatgtggtgtctaattcatttgtatgattg |
112 |
Q |
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| T |
34330829 |
aaaatgagtgttgtgtaattatatataagtgagaggaccataaaattaatgtattgaggttttgagttaagatgtggtgtctaattcatttgtatgattg |
34330928 |
T |
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| Q |
113 |
ttcttgattcaatgtagatgatcatttagactctcctcatgacccaacactgctaccagagttgttggttaataaagtaaaatactccttgtgttgtaag |
212 |
Q |
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| T |
34330929 |
ttcttgattcaatgtagatgatcatttagactctcctcatgacccaacactgctaccagagttgttagttaataaagtaaaatactccttgtgttgcaag |
34331028 |
T |
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| Q |
213 |
tcttgatattgttgtgtaggaagtgtgagataaaagtctcacatttgagttaagatgtgatgttcaactcat |
284 |
Q |
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| T |
34331029 |
tcttgatattgttgtgtaggaagtgtgagataaaagtctcacatttgagttaagatgtgatgttcaactcat |
34331100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 280 - 419
Target Start/End: Original strand, 34331146 - 34331285
Alignment:
| Q |
280 |
ctcataatccggtaatgctaccataatcgatgtttactaaagtgatcgactatattgcgtgattactctttgcccaatatgaatgatctctcgagcattc |
379 |
Q |
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| T |
34331146 |
ctcataatccggtaatgctaccatagtcgatggttactaaagtgatcgactatattgcgtgattactctttgcccaatatgaatgatctctcaagcattc |
34331245 |
T |
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| Q |
380 |
ttcatttgaatgatatgatacaatctttcagagaaataag |
419 |
Q |
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| T |
34331246 |
ttcatttgaatgatatgatacgatctttcatagaaataag |
34331285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 8240432 - 8240366
Alignment:
| Q |
69 |
aggttttgagttaagatgtggtgtctaattcatttgtatgattgttcttgattcaatgtagatgatc |
135 |
Q |
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| T |
8240432 |
aggttttgggttaagatgtggtgtccaactcacttgtatgattgttcttgactcaatgtaaatgatc |
8240366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 97
Target Start/End: Complemental strand, 5691948 - 5691920
Alignment:
| Q |
69 |
aggttttgagttaagatgtggtgtctaat |
97 |
Q |
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| T |
5691948 |
aggttttgagttaagatgtggtgtctaat |
5691920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 3717222 - 3717312
Alignment:
| Q |
71 |
gttttgagttaagatgtggtgtctaattcatttgtatgattgttcttgattcaatgtagatgatcatttagactctcctcatgacccaaca |
161 |
Q |
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| T |
3717222 |
gttttgaattaagatgtgttgtctaacccatttgtacggttgttcttgactcaatatagatgatcatccggactttctttatgacccaaca |
3717312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 33810896 - 33810949
Alignment:
| Q |
107 |
tgattgttcttgattcaatgtagatgatcatttagactctcctcatgacccaac |
160 |
Q |
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| T |
33810896 |
tgattgttcttgactcaatataggtgatcatccagactatcctcatgacccaac |
33810949 |
T |
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