View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15416_low_1 (Length: 1198)

Name: NF15416_low_1
Description: NF15416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15416_low_1
NF15416_low_1
[»] chr4 (8 HSPs)
chr4 (278-1184)||(49583343-49584245)
chr4 (28-277)||(49583037-49583286)
chr4 (627-791)||(49588989-49589153)
chr4 (145-270)||(5198998-5199124)
chr4 (153-237)||(4848615-4848699)
chr4 (200-277)||(15522606-15522683)
chr4 (99-168)||(29866154-29866223)
chr4 (331-364)||(49588574-49588607)
[»] chr5 (2 HSPs)
chr5 (91-212)||(37247603-37247723)
chr5 (121-164)||(27983524-27983567)
[»] chr2 (1 HSPs)
chr2 (91-168)||(5430280-5430357)
[»] chr8 (2 HSPs)
chr8 (146-237)||(7411339-7411429)
chr8 (141-209)||(3424305-3424372)
[»] chr6 (2 HSPs)
chr6 (139-214)||(6134221-6134296)
chr6 (143-203)||(2721839-2721899)
[»] chr1 (4 HSPs)
chr1 (98-218)||(26828549-26828669)
chr1 (87-159)||(34664919-34664991)
chr1 (190-258)||(35811949-35812017)
chr1 (228-277)||(16424901-16424950)


Alignment Details
Target: chr4 (Bit Score: 850; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 850; E-Value: 0
Query Start/End: Original strand, 278 - 1184
Target Start/End: Original strand, 49583343 - 49584245
Alignment:
Q  278 agagcaaactcaatttgccttaaaaccaactattgtatatatatgctccctttaaatatatttaaatttttggacaggtgaatgcagctgaaccagatga 377  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583343 agagcaaactcaattttccttaaaaccaactattgtaaatatatgctatctttaaatatatttaaatttttggacaggtgaatgcagctgaaccagatga 49583442  T
Q  378 acaatcacttccgtggtccattaaatatggtgtttttgatgatccggaaacatctgttgaggtgggtgaaatttaccaggctgaacttccaattttaatt 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583443 acaatcacttccgtggtccattaaatatggtgtttttgatgatccggaaacatctgttgaggtgggtgaaatttaccaggctgaacttccaattttaatt 49583542  T
Q  478 tcaaagtctgagtatattttgttgcaaaataacaccgaggcagaaagtatacaccacaactttcaaatagcattacctatcccaataacttggataaaga 577  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49583543 tcaaagtctgagtatattttgttgcaaaataacaccgaggcagaaagtatacaccacaactttcaaataggattacctatcccaataacttggataaaga 49583642  T
Q  578 gttatgatattcgggaagaaacaaagattgggatgcatgaggagcatgaacataaagggcagattcttgttcctggctctcgaagtgacaactggactga 677  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583643 gttatgatattcgggaagaaacaaagattgggatgcatgaggagcatgaacataaagggcagattcttgttcctggctctcgaagtgacaactggactga 49583742  T
Q  678 aatcgaagaggccggtttagtccttggtttatatatatttgggaagaacttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattg 777  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583743 aattgaagaggccggtttagtccttggtttatatatatttgggaagaacttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattg 49583842  T
Q  778 tcattctattatggaaaatttcgtaagtcttacaaatatcagagatggtgtggatgtagggaaggcaaaagcaagaaatgcaacttagggcataaaattt 877  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49583843 tcattctattatggaaaatttcgtaagtcttacaaatatcagagatggtgtggatgtagggaagggaaaagcaagaaatgcaacttagggcataaaattt 49583942  T
Q  878 tcactgaatcaaggcaacgtgagcttttgtttcgtctgatgccgaatgtaccggaggaagttcaaaatgaattacttgaggtaatgacataaacaatttc 977  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583943 tcactgaatcaaggcaacgtgagcttttgtttcgtctgataccgaatgtaccggaggaagttcaaaatgaattacttgaggtaatgacataaacaatttc 49584042  T
Q  978 aaagtttttcattttaatatcgattgttactccgtccactgtcatggattggatctatacttattgatttgtcttccatacttattatttgctatgttca 1077  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||    
T  49584043 aaagtttttcattttaatatcgattgttactccgtccattgtcatggattggatctatacttattgatttgtcttccatactta----ttgctatgttca 49584138  T
Q  1078 attgattggtaggtgtcagagacacttgcagaaaggaacattagtccagaagattatttttcgactctgaaaaatttaattgggctcaaagcccttgttg 1177  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49584139 attgattggtaggtgtcagagacacttgcagagaggaacattagtccagaagattatttttcgactctgaaaaatttaattgggctcaaagcccttgttg 49584238  T
Q  1178 atggatt 1184  Q
    |||||||    
T  49584239 atggatt 49584245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 28 - 277
Target Start/End: Original strand, 49583037 - 49583286
Alignment:
Q  28 tatcatatccaagattttaaataaaggtctcagtcaagtttgtggttgcgttaagatgtcgcaatttcgattgttacagatgttgcattgcgcattgtgg 127  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583037 tatcatatccaaggttttaaataaaggtctcagtcaagtttgtggttgcgttaagatgtcgcaatttcgattgttacagatgttgcattgcgcattgtgg 49583136  T
Q  128 ttgtcgcagcgtgaattaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttct 227  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583137 ttgtcgcagcgtgaattaatcacaacattgcataagtcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttct 49583236  T
Q  228 taatttcatagtgtaattattttcataatttagtaatgaatttatttctt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583237 taatttcatagtgtaattattttcataatttagtaatgaatttatttctt 49583286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 627 - 791
Target Start/End: Original strand, 49588989 - 49589153
Alignment:
Q  627 acataaagggcagattcttgttcctggctctcgaagtgacaactggactgaaatcgaagaggccggtttagtccttggtttatatatatttgggaagaac 726  Q
    |||||||||| |||||||||||| ||| ||| ||| ||| | ||||||||||||||||||||||  |||||||||||| || |||| |||||||||||||    
T  49588989 acataaagggaagattcttgttcatggttcttgaactgatacctggactgaaatcgaagaggccaatttagtccttggcttttatacatttgggaagaac 49589088  T
Q  727 ttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattgtcattctattatgg 791  Q
    |||||| |||||||||  |||||  |||||||||| |||||||| | | ||||||||||||||||    
T  49589089 ttcgttcaagtgaaaaggtttatacgcaataagaaaatgaaggataaactgtcattctattatgg 49589153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 5198998 - 5199124
Alignment:
Q  145 aatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttca-tagtgtaa 243  Q
    ||||| ||||||||| || | |||| ||||||| ||||| |||| |||| ||||||||| |||||||||||||| ||||||| |||||||| || | |||    
T  5198998 aatcataacattgcacaaatattattaaaattatttatattatcatataatgtataataacttaatttctcattgtttcttcataatttcattactataa 5199097  T
Q  244 ttattttcataatttagtaatgaattt 270  Q
    || |||||||||||| |||||||||||    
T  5199098 ttcttttcataattttgtaatgaattt 5199124  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 153 - 237
Target Start/End: Complemental strand, 4848699 - 4848615
Alignment:
Q  153 cattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttcata 237  Q
    ||||||| || | |||| ||||||| |||||||||| |||| ||||||||| |||||||||||||| ||||||| ||||||||||    
T  4848699 cattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttcataatttcata 4848615  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 277
Target Start/End: Original strand, 15522606 - 15522683
Alignment:
Q  200 aatagcttaatttctcattatttcttcttaatttcatagtgtaattattttcataatttagtaatgaatttatttctt 277  Q
    |||| |||||||||| ||| ||| ||| |||||| ||| ||||||||||||||| |||  ||||||||||| ||||||    
T  15522606 aataacttaatttcttattgtttattcataattttataatgtaattattttcattattatgtaatgaatttgtttctt 15522683  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 29866223 - 29866154
Alignment:
Q  99 tgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattctta 168  Q
    |||||| |||||||| || |  |||||||||||||  | |||||||||||||||||||||| || |||||    
T  29866223 tgttactgatgttgcgttacagattgtggttgtcgtggtgtgaattaatcacaacattgcacaaatctta 29866154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 331 - 364
Target Start/End: Original strand, 49588574 - 49588607
Alignment:
Q  331 aaatatatttaaatttttggacaggtgaatgcag 364  Q
    |||||||||||||| |||||||||||||||||||    
T  49588574 aaatatatttaaatatttggacaggtgaatgcag 49588607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 37247723 - 37247603
Alignment:
Q  91 atttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattcttataaaaattaattatactatctt 190  Q
    ||||||| |||||| |||||||| || |  |||||||||||||| | ||||||||||||||||| |||| || | ||||  |||| | |||| ||||| |    
T  37247723 atttcgagtgttacggatgttgcgttacagattgtggttgtcgcggtgtgaattaatcacaacaatgcacaaatattat-taaatcatttattctatcat 37247625  T
Q  191 atattgtataatagcttaattt 212  Q
    ||| ||||||||| ||||||||    
T  37247624 atagtgtataataacttaattt 37247603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 27983524 - 27983567
Alignment:
Q  121 attgtggttgtcgcagcgtgaattaatcacaacattgcataatt 164  Q
    |||||||| ||||||| |||||||||||||||||||||| ||||    
T  27983524 attgtggtcgtcgcagggtgaattaatcacaacattgcacaatt 27983567  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 5430357 - 5430280
Alignment:
Q  91 atttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattctta 168  Q
    |||||| ||||||| ||||||||||| |  |||||||||||||| | ||||||||||||||| |||||| || |||||    
T  5430357 atttcggttgttacggatgttgcattacagattgtggttgtcgcggtgtgaattaatcacaatattgcacaactctta 5430280  T

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Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 7411339 - 7411429
Alignment:
Q  146 atcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttcata 237  Q
    ||||||||||| || || |||||| ||||||| ||||  ||||||||| ||||||||| |||||||||| ||| |||||||||  |||||||    
T  7411339 atcacaacatttcacaaatcttattaaaattatttatgatatcttataatgtataataacttaatttct-attgtttcttcttcttttcata 7411429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 3424305 - 3424372
Alignment:
Q  141 aattaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaa 209  Q
    |||||||||||||| |||| |||  |||||||||||| |||||||||| |||| ||||||||| |||||    
T  3424305 aattaatcacaacaatgcacaata-ttataaaaattatttatactatcatataatgtataataacttaa 3424372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 6134221 - 6134296
Alignment:
Q  139 tgaattaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttct 214  Q
    ||||||||||||||||||||| || |||||| ||||| | ||||||||||  ||| ||||||||| ||| ||||||    
T  6134221 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttct 6134296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 2721899 - 2721839
Alignment:
Q  143 ttaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataata 203  Q
    ||||||||||| |||||||| | |||| ||||||| |||||||||| |||| |||||||||    
T  2721899 ttaatcacaaccttgcataaatattattaaaattatttatactatcatataatgtataata 2721839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 218
Target Start/End: Complemental strand, 26828669 - 26828549
Alignment:
Q  98 ttgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattcttataaaaattaattatactatcttatattgt 197  Q
    |||||| |||||||||||| |  |||||  ||||||| | || ||||||||||||||||||| || | |||| ||| ||| |||||||| | |||| |||    
T  26828669 ttgttatagatgttgcattacagattgttattgtcgcggtgtaaattaatcacaacattgcacaaattttattaaacttatttatactaacatataatgt 26828570  T
Q  198 ataatagcttaatttctcatt 218  Q
      || | ||||||||||||||    
T  26828569 gaaaaaacttaatttctcatt 26828549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 34664991 - 34664919
Alignment:
Q  87 cgcaatttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgca 159  Q
    |||||||||| ||||||| |||||||||||  | |||||||||||| | |  ||||||||| |||||||||||    
T  34664991 cgcaatttcggttgttacggatgttgcattatggattgtggttgtcacggtatgaattaattacaacattgca 34664919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 35812017 - 35811949
Alignment:
Q  190 tatattgtataatagcttaatttctcattatttcttcttaatttcatagtgtaattattttcataattt 258  Q
    |||| ||||||||| |||||||||||| | ||||||||||||| |||| ||||||| |||  |||||||    
T  35812017 tataatgtataataacttaatttctcactgtttcttcttaattccataatgtaattctttcaataattt 35811949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 16424901 - 16424950
Alignment:
Q  228 taatttcatagtgtaattattttcataatttagtaatgaatttatttctt 277  Q
    |||||||||| || |||||||||| |||||| ||||||||||| ||||||    
T  16424901 taatttcataatgaaattattttcttaattttgtaatgaatttgtttctt 16424950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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