View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15416_low_10 (Length: 315)
Name: NF15416_low_10
Description: NF15416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15416_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 14237296 - 14237600
Alignment:
| Q |
1 |
gacgtaaatactatatactatatttgggccgaatagatgtacctttttgcttatattaaagtcttcaaagagtatttatgttcaataaaattagaaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14237296 |
gacgtaaatactatatactatatttgggccgaatagatgtacctttttgcttatattaaagtcttcaaggagtatttatgttcaataaaattagaaaaca |
14237395 |
T |
|
| Q |
101 |
aacctgaagagtcaagctttccttctttctttctaacttcatctcccagttggcacttatccaacgcctattttacagaatgtaaaccagtatttgaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14237396 |
aacctgaagagtcaagctttccttctttctttctaacttcatctcccagttggcacttatccaacgcctattttacagaatgtaaaccagtatttgaaga |
14237495 |
T |
|
| Q |
201 |
acagttacaagtataaaattttgctcaaaaccaagtgtcactgttattgcatttttcttttcaacaaatnnnnnnncgcaaacacacctcccatatttgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
14237496 |
acagttacaagtataaaattttgctcaaaaccaagtgtcactgttattgcatttttcttttcaacaaataaaaaaacacaaacacacctcccatatttgt |
14237595 |
T |
|
| Q |
301 |
tcatc |
305 |
Q |
| |
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||||| |
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| T |
14237596 |
tcatc |
14237600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 33 - 305
Target Start/End: Complemental strand, 14377931 - 14377662
Alignment:
| Q |
33 |
atagatgtacctttttgcttatattaaagtcttcaaagagtatttatgttcaataaaattagaaaacaaacctgaagagtcaagctttccttctttcttt |
132 |
Q |
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||||||||||| ||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
14377931 |
atagatgtacccttttgcttatatttaagtctgcaaggagtatttatgttcaataaaattagaagacaaacctgaagagtcaagctttccttcattcttt |
14377832 |
T |
|
| Q |
133 |
ctaacttcatctcccagttggcacttatccaacgcctattttacagaatgtaaaccagtatttgaagaacagttacaagtataaaattttgctcaaaacc |
232 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||| |||||||||| |||||||||||||||| | ||| || |||||||||| |||||||| |
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| T |
14377831 |
ctaacttcatctcccagttgacacttatccaaggcctattttaaagaatgtaaatcagtatttgaagaacaatcacatgtctaaaattttgttcaaaacc |
14377732 |
T |
|
| Q |
233 |
aagtgtcactgttattgcatttttcttttcaacaaatnnnnnnncgcaaacacacctcccatatttgttcatc |
305 |
Q |
| |
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||| |||| ||| ||||||||| | |||||||||| | ||||||||||||||||||||||||||| |
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| T |
14377731 |
aagggtcattgtcattgcattt---tgttcaacaaataaaaaaacacaaacacacctcccatatttgttcatc |
14377662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 87 - 253
Target Start/End: Original strand, 41435258 - 41435425
Alignment:
| Q |
87 |
aaaattagaaaacaaacctgaagagtcaagctttccttctttctttctaacttcatctcccagttggcacttatccaacgcctattttacagaatgtaaa |
186 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| |||||||||| |||||||||| |
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| T |
41435258 |
aaaattagaatacaaacctgaagagtcaagctttccttctttctttcgaacttcgtctcccagttgacacttatccaaagcctattttaaagaatgtaaa |
41435357 |
T |
|
| Q |
187 |
ccagtatttgaagaacagttacaagtataaaattttgctca-aaaccaagtgtcactgttattgcatt |
253 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||| | || || ||||||| |||||| |||||||| |
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|
| T |
41435358 |
tcagtatttgaagaacaattacaagtctaatatttttcacagaacccaagtgccactgtcattgcatt |
41435425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 70 - 251
Target Start/End: Original strand, 41448458 - 41448639
Alignment:
| Q |
70 |
gagtatttatgttcaataaaattagaaaacaaacctgaagagtcaagctttccttctttctttctaacttcatctcccagttggcacttatccaacgcct |
169 |
Q |
| |
|
|||| ||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||| |
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| T |
41448458 |
gagtgtttgtgttcaacaaaattagaatacaaacctgaagagtcaagctttccttctttctttcgaacttcatctcccagttgacacttatccaaagcct |
41448557 |
T |
|
| Q |
170 |
attttacagaatgtaaaccagtatttgaagaacagttacaagtataaaattttgctca-aaaccaagtgtcactgttattgca |
251 |
Q |
| |
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| |||| |||| ||||| |||||||||||||||| |||||||| ||| ||||| | || || ||||||| |||||| |||||| |
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| T |
41448558 |
a-tttaaagaaggtaaatcagtatttgaagaacaattacaagtctaatatttttcacagaacccaagtgccactgtcattgca |
41448639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 41442345 - 41442494
Alignment:
| Q |
75 |
tttatgttcaataaaattagaaaacaaacctgaagagtcaagctttccttctttctttctaacttcatctcccagttggcacttatccaacgcctatttt |
174 |
Q |
| |
|
|||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| ||||||||| |
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| T |
41442345 |
tttatgtttaacaaaattagaagacaaacctgaagagtcaagctttccttctttctttcgaacttcctctcccagttgacacttatccaaagcctatttt |
41442444 |
T |
|
| Q |
175 |
acagaatgtaaaccagtatttgaagaacagttacaagtataaaattttgc |
224 |
Q |
| |
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| | |||||| | |||||||||||||||| |||||||| ||| ||||||| |
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| T |
41442445 |
aaaaaatgtagatcagtatttgaagaacaattacaagtctaatattttgc |
41442494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 40 - 235
Target Start/End: Original strand, 32118060 - 32118254
Alignment:
| Q |
40 |
tacctttttgcttatattaaagtcttcaaagagtatttatgttcaataaaattagaaaacaaacctgaagagtcaagctttccttctttctttctaactt |
139 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||| |||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
32118060 |
tacctttttgcttatatttatgtctgaggagagtatttatattcaataaaatt-gaaggc-aacctgaagagtcaagctttccttctttctttctaactt |
32118157 |
T |
|
| Q |
140 |
catctcccagttggcacttatccaacgcctatttt-acagaatgtaaaccagtatttgaagaacagttacaagtataaaattttgctcaaaaccaag |
235 |
Q |
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||||||||||||| ||||||||||| ||||||||| | |||| ||||| ||||||||||||||| |||||||| |||| |||| ||||||||||| |
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|
| T |
32118158 |
catctcccagttgacacttatccaaggcctattttaaaagaacgtaaattagtatttgaagaacaattacaagtcaaaaaatttgttcaaaaccaag |
32118254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 22666819 - 22666881
Alignment:
| Q |
99 |
caaacctgaagagtcaagctttccttctttctttctaacttcatctcccagttggcacttatc |
161 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| || ||||||||||| ||||||||| |||| |
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|
| T |
22666819 |
caaacctgtagagtcaagctttccttctttcttcctcacttcatctccaagttggcacatatc |
22666881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 22723458 - 22723520
Alignment:
| Q |
99 |
caaacctgaagagtcaagctttccttctttctttctaacttcatctcccagttggcacttatc |
161 |
Q |
| |
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|||||||| |||||||||||||||||||||||| || ||||||||||| ||||||||| |||| |
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| T |
22723458 |
caaacctgtagagtcaagctttccttctttcttcctcacttcatctccaagttggcacatatc |
22723520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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