View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15416_low_16 (Length: 240)
Name: NF15416_low_16
Description: NF15416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15416_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 92 - 222
Target Start/End: Original strand, 3952306 - 3952436
Alignment:
| Q |
92 |
ataatttgataccattaattagaatagtctgtttcttataaatactttatagtataatatttttatcttagaaaatattcatgcctataaaataagaagt |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3952306 |
ataatttgataccattaattagaatagtctgtttcttataaatactttatagtataatatttttatcttagaaaatattcatgcctataaaataagaagt |
3952405 |
T |
|
| Q |
192 |
ggcagcatctacttcatgagttttctattta |
222 |
Q |
| |
|
||||||||||||||||| ||||||| |||| |
|
|
| T |
3952406 |
ggcagcatctacttcattggttttcttttta |
3952436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 3952031 - 3952125
Alignment:
| Q |
2 |
gtatttttctatctatttttaaccattatgtttgttttataaatttgaaatcatgcattgcgataatgcagatcagattgaagtgtgaaaataat |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3952031 |
gtatttttctatctatttttaaccattatgtttgttttataaatttgaaatcatgcattgcgataatgcagatcagattgaagtgtgaaaataat |
3952125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 4012621 - 4012508
Alignment:
| Q |
71 |
agatcagattgaagtgtgaaaataatttgataccattaattagaatagtctgtttcttataaatactttatagtataatatttttatcttagaaaatatt |
170 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||| ||| ||| |||||||||||| || |
|
|
| T |
4012621 |
agatcagattgaagtgtgaaaataatttgttaccattggttagaatagtctgtttcttatcaatactttatagtatgataatttgatcttagaaaatgtt |
4012522 |
T |
|
| Q |
171 |
catgcctataaaat |
184 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
4012521 |
catgtctataaaat |
4012508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 3822043 - 3821959
Alignment:
| Q |
70 |
cagatcagattgaagtgtgaaaataatttgataccattaattagaatagtctgtttcttataaatactttatagtataatatttt |
154 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| ||||||||||| |||||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
3822043 |
cagatcagattgaaatatgaaaataatttgatagcattaattagagcagtctgtttcttatcaatactttaaactataatatttt |
3821959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 4003933 - 4003877
Alignment:
| Q |
110 |
ttagaatagtctgtttcttataaatactttatagtataatatttttatcttagaaaa |
166 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||| || ||||||||||| |
|
|
| T |
4003933 |
ttagaatagtctgtttcttatcaatactttaaagtataataacttgatcttagaaaa |
4003877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 3812405 - 3812361
Alignment:
| Q |
70 |
cagatcagattgaagtgtgaaaataatttgataccattaattaga |
114 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| ||||||||||| |
|
|
| T |
3812405 |
cagatcagattgaaatatgaaaataatttgatagcattaattaga |
3812361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University