View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15416_low_2 (Length: 553)
Name: NF15416_low_2
Description: NF15416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15416_low_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 264 - 553
Target Start/End: Complemental strand, 23386505 - 23386215
Alignment:
| Q |
264 |
cccacctttacaaaattagaagtccacttcttttccactaagaaacacaatttagaaaaaa-ggtccacaactatgatatggacagtgatgccaaaatct |
362 |
Q |
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| T |
23386505 |
cccacctttacaaaattagaagtccacttcttttccactaataaacacaatttagaaaaaaaggtccacaactatgatatggacagtgatgctaaaatct |
23386406 |
T |
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| Q |
363 |
ttgatgtttttgggattagtgttttaaaaatcagaccgaaccgattggtgttctattcatttaactgaaaattaattagtttattgattggttttatttt |
462 |
Q |
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| T |
23386405 |
ttgatgtttttgggactaatgttttaaaaatcagaccgaaccgatcggtgttctattcatttaactaaaaattaattagtttaatgattggttttatttt |
23386306 |
T |
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| Q |
463 |
gattgtattttattctcattgaaaagtattgaattgagatatagaatagaatcaagctctattaatatttactttttaatatgattttaat |
553 |
Q |
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| T |
23386305 |
gattgtattttattctcattgggcaggattgaattgagatatagaatagaatcaagctcgattaatatttactttttaatatgattttaat |
23386215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 23386749 - 23386583
Alignment:
| Q |
14 |
agttaggatgcgatattatgtatatataagataatgtcgtcatattattatttaaggtggggttcaggagttattggattctgttgcagtctgccacata |
113 |
Q |
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| T |
23386749 |
agttaggatgcgatattatgtatatataagataatgtcgtcatattattatttaaggtggggttcaggggttattggattctgttgcagtctgccacata |
23386650 |
T |
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| Q |
114 |
tataagaacttcccctcataacacctcataccatggatatgttctgcaataatgcattggaatcgtt |
180 |
Q |
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| T |
23386649 |
tataagaacttcccctcataacacctcataccatggatatgttctgcaataatgcattggaatcgtt |
23386583 |
T |
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