View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15416_low_4 (Length: 466)
Name: NF15416_low_4
Description: NF15416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15416_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 20 - 455
Target Start/End: Complemental strand, 36658101 - 36657663
Alignment:
| Q |
20 |
ctaaatagcatatgtatattattatttagtaattattttggttaccgcaaatttctataatgaagttcttatgtattcnnnnnnnnn---catccgcaat |
116 |
Q |
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| T |
36658101 |
ctaaatagcatatgtatattattatttagtaattattttggttaccgcaaatttctataatgaagttcttatgtatttttttttttttctcatccgcaat |
36658002 |
T |
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| Q |
117 |
actgtgatttctcaacaccaaaagcgatctttaaagcaaaacgtgaataagatatgtgtggtttatgatgtaagtgtagacaaacatgataccatttgtc |
216 |
Q |
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| T |
36658001 |
actgtgatttctcaacaccaaaagcgatctttaaagcaaaacgtgaataagatatgtgtggtttatgatgtaagtgtagacaaacatgataccatttgtc |
36657902 |
T |
|
| Q |
217 |
tggaataatcaaactcaaccacagagaagtttaatgttaacaattccatttttaaaacatgaaacttgtcaaaacaatgtcatcatttcattcgacattg |
316 |
Q |
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| T |
36657901 |
tgggataatcaaactcaaccacagagaagtttaatgttaacaattccatttttaaaacatgaaacttgtcaaaacaatgtcatcatttcattcgacattg |
36657802 |
T |
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| Q |
317 |
tctcatcctagatataaaaatttgtctactcatttcttactaatgaatctatcattagagggtagtacaaccaactataagagacttaaagtttcgacca |
416 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36657801 |
tctcatcctagatataaaaatttgtccactcatttcttactaatgaatctatcattagagggtagtacaaccaactataagagacttaaagtttcgacca |
36657702 |
T |
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| Q |
417 |
tataaagtgcttcacaaacattttcttgagaataatcta |
455 |
Q |
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| T |
36657701 |
tataaagtgcttcacaaacattttcttgagaataatcta |
36657663 |
T |
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