View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15416_low_7 (Length: 381)

Name: NF15416_low_7
Description: NF15416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15416_low_7
NF15416_low_7
[»] chr4 (7 HSPs)
chr4 (1-360)||(21834429-21834796)
chr4 (288-350)||(1548557-1548619)
chr4 (296-353)||(566101-566158)
chr4 (299-352)||(644746-644799)
chr4 (229-270)||(1600295-1600336)
chr4 (299-352)||(12121588-12121641)
chr4 (317-353)||(546846-546882)
[»] chr5 (1 HSPs)
chr5 (19-139)||(28524911-28525035)
[»] chr6 (13 HSPs)
chr6 (220-350)||(19632275-19632405)
chr6 (228-350)||(6594739-6594861)
chr6 (16-100)||(14800856-14800940)
chr6 (220-355)||(6589451-6589586)
chr6 (220-353)||(6394700-6394833)
chr6 (232-341)||(7994324-7994433)
chr6 (220-353)||(14820529-14820662)
chr6 (220-351)||(10579869-10580000)
chr6 (317-355)||(6603330-6603368)
chr6 (220-305)||(6423053-6423138)
chr6 (309-353)||(6432086-6432130)
chr6 (301-353)||(6585367-6585419)
chr6 (225-261)||(6597120-6597156)
[»] chr3 (3 HSPs)
chr3 (95-137)||(46926701-46926743)
chr3 (314-353)||(51113911-51113950)
chr3 (161-190)||(51764737-51764766)
[»] chr7 (2 HSPs)
chr7 (220-353)||(15092281-15092414)
chr7 (161-190)||(10614398-10614427)
[»] chr2 (1 HSPs)
chr2 (317-353)||(45245215-45245251)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 21834796 - 21834429
Alignment:
Q  1 tggaagcggcgttttgagtacaaaaatggtggaggtggtatttgagagtacaacgatggt--------aaaaataaaac-taaaactatgtacacacaca 91  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||         ||||| ||||| |||||||||| |||||||||    
T  21834796 tggaagcggcgttttgagtacaaaaatggtggaggtgctatttgggagtacaacgatggataaaaaaaaaaaaaaaaacataaaactatgaacacacaca 21834697  T
Q  92 tttaacaacacgacattcaaccgcttgcattacattgtacattatatatactttggaaattatcaagcaatgagtaaatgcacatttgtaagttgacata 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21834696 tttaacaacacgacattcaaccgcttgcattacattgtacattatatatactttggaaattatcaagcaatgagtaaatgcacatttgtaagttgacata 21834597  T
Q  192 aaatcttaaaacaaaaactacttacaggatactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaa 291  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21834596 aaatcttaaaacaaaaac-acttacaggatactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtcacttaaatgcaaatcccccaa 21834498  T
Q  292 atgaatttctctcagtcgtgtacatttttctaccatatgtttcactcccttctctgtgacataacgtcc 360  Q
    || ||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  21834497 attaatttctctcagttgtgtacatctttctaccatatgtttcattcccttctctgtgacataacgtcc 21834429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 350
Target Start/End: Complemental strand, 1548619 - 1548557
Alignment:
Q  288 ccaaatgaatttctctcagtcgtgtacatttttctaccatatgtttcactcccttctctgtga 350  Q
    |||||| ||||||||||||| | |  || |||||| | |||||||||||||||||||||||||    
T  1548619 ccaaattaatttctctcagttgcgagcagttttcttctatatgtttcactcccttctctgtga 1548557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 353
Target Start/End: Original strand, 566101 - 566158
Alignment:
Q  296 atttctctcagtcgtgtacatttttctaccatatgtttcactcccttctctgtgacat 353  Q
    |||||||||||| |||| || ||||| ||||  |||||||||||||||||||| ||||    
T  566101 atttctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgtaacat 566158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 644746 - 644799
Alignment:
Q  299 tctctcagtcgtgtacatttttctaccatatgtttcactcccttctctgtgaca 352  Q
    ||||||||| |||| |||||||| |||| |||||||||||| ||||| ||||||    
T  644746 tctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgaca 644799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 1600295 - 1600336
Alignment:
Q  229 aagaaggcatccacgacgcgagaagaatttcctcttttcgtc 270  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  1600295 aagaaggcatccatgactcgagaagaatttcctattttcgtc 1600336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 12121641 - 12121588
Alignment:
Q  299 tctctcagtcgtgtacatttttctaccatatgtttcactcccttctctgtgaca 352  Q
    ||||| ||| |||| ||||||||||||| ||| ||||||||| |||||||||||    
T  12121641 tctcttagttgtgtgcatttttctaccacatgcttcactcccatctctgtgaca 12121588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 546846 - 546882
Alignment:
Q  317 ttttctaccatatgtttcactcccttctctgtgacat 353  Q
    ||||||| || ||||||||||||||||||||||||||    
T  546846 ttttctagcacatgtttcactcccttctctgtgacat 546882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 28524911 - 28525035
Alignment:
Q  19 tacaaaaatggtggaggtggtatttgagagtacaacgatggtaaaaataaaactaaaactatgt----acacacacatttaacaacacgacattcaaccg 114  Q
    |||||| |||||||||||||  |||||| ||||||||||||||||||||| | |||||||||||    | ||||||||||||||| ||  || ||||| |    
T  28524911 tacaaagatggtggaggtggcgtttgagggtacaacgatggtaaaaataatagtaaaactatgtccacatacacacatttaacaaaacttcactcaactg 28525010  T
Q  115 cttgcattacattgtacattatata 139  Q
    |||||||| ||||| ||||||||||    
T  28525011 cttgcattgcattgcacattatata 28525035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 350
Target Start/End: Original strand, 19632275 - 19632405
Alignment:
Q  220 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 319  Q
    |||||||||||||||||||||| ||||| || ||| ||||||  ||| ||| ||| |||| | ||||||||||| ||| ||  ||||| || | || |||    
T  19632275 atactagcaaagaaggcatccatgacgcaagcagagtttcctagttttgtcacttgaatgaatatcccccaaataaatctccttcagttgtttgcagttt 19632374  T
Q  320 tctaccatatgtttcactcccttctctgtga 350  Q
    |||||||  ||||||||||||||||||||||    
T  19632375 tctaccacgtgtttcactcccttctctgtga 19632405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 350
Target Start/End: Complemental strand, 6594861 - 6594739
Alignment:
Q  228 aaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttttctaccat 327  Q
    ||||||||||||| ||||||||||||| || |||  ||||||| ||||||||  || ||| |||||  |||||||||| | |||| || ||||||||||     
T  6594861 aaagaaggcatccccgacgcgagaagagttccctaatttcgtcacttaaatgacaacccctcaaatacatttctctcaattgtgtgcagttttctaccac 6594762  T
Q  328 atgtttcactcccttctctgtga 350  Q
    ||||||  |||||| ||||||||    
T  6594761 atgtttggctccctcctctgtga 6594739  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 14800856 - 14800940
Alignment:
Q  16 gagtacaaaaatggtggaggtggtatttgagagtacaacgatggtaaaaataaaactaaaactatgtacacacacatttaacaac 100  Q
    ||||||||| |||||||||||||  |||||| |||||| |  ||||| ||| |||||||  ||||||||||||||||||||||||    
T  14800856 gagtacaaagatggtggaggtggagtttgagggtacaatggcggtaacaatgaaactaatgctatgtacacacacatttaacaac 14800940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 355
Target Start/End: Complemental strand, 6589586 - 6589451
Alignment:
Q  220 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 319  Q
    ||||||| ||||| |||||||| || | ||||||| || |||  ||| ||| |||||||| | |||||||| || ||| |||   |||||||| || |||    
T  6589586 atactagtaaagatggcatccatgatgggagaagatttccctagttttgtcacttaaatgaatatcccccagataaatctcttgaagtcgtgtgcagttt 6589487  T
Q  320 tctaccatatgtttcactcccttctctgtgacataa 355  Q
    ||||||| |||||||||||||| ||| |||||||||    
T  6589486 tctaccacatgtttcactccctcctccgtgacataa 6589451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 353
Target Start/End: Original strand, 6394700 - 6394833
Alignment:
Q  220 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 319  Q
    ||||||||||| | |||||||||||||| | |  | || ||| |||||||| |||| ||  | ||||||||||| ||| ||||||| | |||| || |||    
T  6394700 atactagcaaatacggcatccacgacgcaatagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttt 6394799  T
Q  320 tctaccatatgtttcactcccttctctgtgacat 353  Q
    ||||||| ||||| ||| ||||| ||||||||||    
T  6394800 tctaccacatgttccacacccttttctgtgacat 6394833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 341
Target Start/End: Complemental strand, 7994433 - 7994324
Alignment:
Q  232 aaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttttctaccatatgt 331  Q
    |||||||||  |||||||||||| || ||| |||| ||| |||| ||| |||||||| |||| ||| ||| ||||| | || || |||||||||| ||||    
T  7994433 aaggcatccgtgacgcgagaagagttccctatttttgtcacttatatgaaaatcccctaaataaatctctttcagttgcgtgcagttttctaccacatgt 7994334  T
Q  332 ttcactccct 341  Q
    ||||||||||    
T  7994333 ttcactccct 7994324  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 353
Target Start/End: Original strand, 14820529 - 14820662
Alignment:
Q  220 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 319  Q
    ||||||||||||| | |||||||||||||| | || ||||||  ||| |   |||||||| ||  || |||||| ||| ||||||||  |||| || |||    
T  14820529 atactagcaaagatgacatccacgacgcgatatgagtttcctaattttgagacttaaatgaaaccccgccaaattaatctctctcagctgtgtgcagttt 14820628  T
Q  320 tctaccatatgtttcactcccttctctgtgacat 353  Q
    | ||||| ||||||||| ||||||||||||||||    
T  14820629 tttaccacatgtttcacacccttctctgtgacat 14820662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 220 - 351
Target Start/End: Complemental strand, 10580000 - 10579869
Alignment:
Q  220 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttt-tcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacattt 318  Q
    |||||||||||||||||||||| ||||| ||||||||  ||| ||| || || |||||||  |||||  |||| | ||| ||||| ||| |||| || ||    
T  10580000 atactagcaaagaaggcatccatgacgcaagaagaatcccctatttatcctc-cttaaatctaaatcatccaagtaaatctctctaagttgtgtgcagtt 10579902  T
Q  319 ttctaccatatgtttcactcccttctctgtgac 351  Q
    |||||||| |||||| |||||||||| ||||||    
T  10579901 ttctaccacatgtttaactcccttctttgtgac 10579869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 6603368 - 6603330
Alignment:
Q  317 ttttctaccatatgtttcactcccttctctgtgacataa 355  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  6603368 ttttctaccacatgtttcactcctttctctgtgacataa 6603330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 6423053 - 6423138
Alignment:
Q  220 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctca 305  Q
    |||||||||||||||||||||||||  | ||| || |||| | |||| ||| |||| ||| ||||| ||||||| ||| |||||||    
T  6423053 atactagcaaagaaggcatccacgatccaagatgagtttcttatttttgtcacttacatgaaaatctcccaaataaatctctctca 6423138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 6432086 - 6432130
Alignment:
Q  309 gtgtacatttttctaccatatgtttcactcccttctctgtgacat 353  Q
    |||| ||||||||||||| | ||||||||||||||| ||||||||    
T  6432086 gtgtgcatttttctaccacaagtttcactcccttctgtgtgacat 6432130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 6585419 - 6585367
Alignment:
Q  301 tctcagtcgtgtacatttttctaccatatgtttcactcccttctctgtgacat 353  Q
    ||||||| |||| ||  ||||||||| |||||||| |||||||||||||||||    
T  6585419 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctctgtgacat 6585367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 6597156 - 6597120
Alignment:
Q  225 agcaaagaaggcatccacgacgcgagaagaatttcct 261  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  6597156 agcaaagaaggcatccatgacgcaagaagaatttcct 6597120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 46926701 - 46926743
Alignment:
Q  95 aacaacacgacattcaaccgcttgcattacattgtacattata 137  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46926701 aacaacacgacattcaaccgcttgcattacattgtacattata 46926743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 353
Target Start/End: Complemental strand, 51113950 - 51113911
Alignment:
Q  314 catttttctaccatatgtttcactcccttctctgtgacat 353  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  51113950 catttttctaccacatgcttcactcccttctctgtgacat 51113911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 190
Target Start/End: Complemental strand, 51764766 - 51764737
Alignment:
Q  161 atgagtaaatgcacatttgtaagttgacat 190  Q
    ||||||||||||||||||||||||||||||    
T  51764766 atgagtaaatgcacatttgtaagttgacat 51764737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 353
Target Start/End: Complemental strand, 15092414 - 15092281
Alignment:
Q  220 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 319  Q
    ||||||||||| | ||||||||||||||||||| | ||||||  ||| ||| |||| ||| | || || ||||| ||| ||||||| | |||| || |||    
T  15092414 atactagcaaatatggcatccacgacgcgagaatagtttcctagttttgtcacttacatggatataccgcaaattaatctctctcaattgtgtgcagttt 15092315  T
Q  320 tctaccatatgtttcactcccttctctgtgacat 353  Q
    |||| || |||||||||||||   ||||||||||    
T  15092314 tctagcacatgtttcactcccacttctgtgacat 15092281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 190
Target Start/End: Original strand, 10614398 - 10614427
Alignment:
Q  161 atgagtaaatgcacatttgtaagttgacat 190  Q
    ||||||||||||||||||||||||||||||    
T  10614398 atgagtaaatgcacatttgtaagttgacat 10614427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 45245251 - 45245215
Alignment:
Q  317 ttttctaccatatgtttcactcccttctctgtgacat 353  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  45245251 ttttctaccacatgtttcactcccttatctgtgacat 45245215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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