View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15417_high_1_N (Length: 333)
Name: NF15417_high_1_N
Description: NF15417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15417_high_1_N |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 6 - 333
Target Start/End: Original strand, 43802099 - 43802426
Alignment:
| Q |
6 |
agaagcatagggatttcgtagacattctactctcactgatgcaccaaccgatcgatctctctgacgaaaaaacccatgtcgttgatcgaacaaacataaa |
105 |
Q |
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| T |
43802099 |
agaagcataaggacttcgtagacattctactctcactgatgcaccaaccgatcgatccctctgacgaaaaaacccatgtcgttgatcgaacaaacataaa |
43802198 |
T |
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| Q |
106 |
ggctatatccctagacatgattgccggggcatttgaaacttccgtaacagttgtggagtgggctttatcagagctcatgaggcatccaagagtgatgaaa |
205 |
Q |
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| T |
43802199 |
ggctatatccctagacatgattgccggggcatttgaaacttccgcaacggttgtggagtgggctttatcagagctcatgaggcatccaagagtgatgaaa |
43802298 |
T |
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| Q |
206 |
aatctccaacaagagctagataacgtggttggggcgaagaaattagtagaagaaaatgatttgtcaaagttaagttacttggatattgtgatcatggaga |
305 |
Q |
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| T |
43802299 |
aatctccaacaagagctagataacgtggttggggcgaacaaattagtagaagaaaatgatttgtcaaagttaagttacttggatattgtgatcatggaga |
43802398 |
T |
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| Q |
306 |
ccttaagattataccctccgggaccact |
333 |
Q |
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| T |
43802399 |
ccttaagattataccctccgggaccact |
43802426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 24 - 333
Target Start/End: Original strand, 43812686 - 43812995
Alignment:
| Q |
24 |
tagacattctactctcactgatgcaccaaccgatcgatctctctgacgaaaaaacccatgtcgttgatcgaacaaacataaaggctatatccctagacat |
123 |
Q |
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| T |
43812686 |
tagacattctactctcactgacgcaccagacgattgatccctctgacgaacaaagccatgtcattgatcgaacaaacataaaggctatagccttagacat |
43812785 |
T |
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| Q |
124 |
gattgccggggcatttgaaacttccgtaacagttgtggagtgggctttatcagagctcatgaggcatccaagagtgatgaaaaatctccaacaagagcta |
223 |
Q |
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| T |
43812786 |
gatcgccgcggcatttgacacttctgcaaccattgtggagtgggctttatccgagctcatgaggcatccaagagtaatgaaaaatctccaacaagagctg |
43812885 |
T |
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| Q |
224 |
gataacgtggttggggcgaagaaattagtagaagaaaatgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctc |
323 |
Q |
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| T |
43812886 |
gatagtgtagttgggatgaacaaattagtggaggagaatgatatggcaaagttaagttacttagatattgtgatcatggagaccttaagattatatcctg |
43812985 |
T |
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| Q |
324 |
cgggaccact |
333 |
Q |
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| T |
43812986 |
caggaccact |
43812995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 29944727 - 29944776
Alignment:
| Q |
161 |
gagtgggctttatcagagctcatgaggcatccaagagtgatgaaaaatct |
210 |
Q |
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| T |
29944727 |
gagtgggctttatccgaacttttaaggcatccaagagtgatgaaaaatct |
29944776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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