View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15417_low_2 (Length: 321)
Name: NF15417_low_2
Description: NF15417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15417_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 111 - 303
Target Start/End: Complemental strand, 28160869 - 28160683
Alignment:
| Q |
111 |
cctttccacagatgaatttctgatttcgaacactgcttatacggctcccacttatatctcccttacaaaatttcaagtcctcgcacacaaaatactgcac |
210 |
Q |
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| T |
28160869 |
cctttccacaaatgaatttctgatttcgaacactgcttatacggctcccacatatatctccct--cacaatttcgagtcctcgcacacaaaatactgcac |
28160772 |
T |
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| Q |
211 |
aggtgaatcatcaatattcattcagtttcagccgtcgacaatacacctccattgagtttctagggttgagtagcacttcttggcaggtattgg |
303 |
Q |
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| T |
28160771 |
aggtgtatcatcaat----attcagtttgagccgtcgacaatacgcctccattgagtttctagggttgagtagcatttatttgcaggtattgg |
28160683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 28160914 - 28160868
Alignment:
| Q |
45 |
aagtagcagtttccttaacaaagccatcactaacacaagtcatatcc |
91 |
Q |
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| T |
28160914 |
aagtagcagtttccttaacaaagccatcaccaacacaagtcatatcc |
28160868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 114 - 303
Target Start/End: Original strand, 24121835 - 24122020
Alignment:
| Q |
114 |
ttccacagatgaatttctgatttcgaacactgcttatacggctcccacttatatctcccttacaaaatttcaagtcctcgcacacaaaatactgcacagg |
213 |
Q |
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| T |
24121835 |
ttccacagatgcatttctgatttctataagtggttacacggctcccattaataaatcccctacaagactgccagtccttgcatgtaaaatactgcgcagg |
24121934 |
T |
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| Q |
214 |
tgaatcatcaatattcattcagtttcagccgtcgacaatacacctccattgagtttctagggttgagtagcacttcttggcaggtattgg |
303 |
Q |
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| T |
24121935 |
tgtgtcatcaatattca----gtttgagctgttgacaatacgcctccattgagtttctagggttgagtagcatttctttgcaggtattgg |
24122020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 215
Target Start/End: Original strand, 24132264 - 24132367
Alignment:
| Q |
112 |
ctttccacagatgaatttctgatttcgaacactgcttatacggctcccacttatatctcccttacaaaatttcaagtcctcgcacacaaaatactgcaca |
211 |
Q |
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| T |
24132264 |
ctttccacaaatgcatttctgattcctaaaagtagttacacgggtcccacttatatctcccctacaaaactgccagtcctcgcatgcaaaatactgcaca |
24132363 |
T |
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| Q |
212 |
ggtg |
215 |
Q |
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|||| |
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| T |
24132364 |
ggtg |
24132367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 24154014 - 24154055
Alignment:
| Q |
49 |
agcagtttccttaacaaagccatcactaacacaagtcatatc |
90 |
Q |
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| T |
24154014 |
agcagtttccttaacaaagccatcaggaacacaagtcatatc |
24154055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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