View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15418_low_2 (Length: 421)

Name: NF15418_low_2
Description: NF15418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15418_low_2
NF15418_low_2
[»] chr7 (4 HSPs)
chr7 (141-403)||(13775900-13776160)
chr7 (194-401)||(43104765-43104984)
chr7 (1-96)||(13776241-13776336)
chr7 (360-400)||(46623336-46623376)
[»] chr6 (1 HSPs)
chr6 (194-357)||(4596340-4596506)
[»] chr8 (1 HSPs)
chr8 (261-401)||(28542524-28542676)
[»] scaffold0037 (1 HSPs)
scaffold0037 (255-339)||(28329-28414)
[»] chr5 (1 HSPs)
chr5 (360-401)||(6264665-6264706)


Alignment Details
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 141 - 403
Target Start/End: Complemental strand, 13776160 - 13775900
Alignment:
Q  141 ggtttggggatagtgccttaagagagggaggactttagatcact--------ttttgttt---gttttgaagaagctaaaacggaattatataaacataa 229  Q
    ||||||||||||||||||||||||||||||||||||||||   |        ||||||||   ||||||||||||| |||| ||||||||||||||| ||    
T  13776160 ggtttggggatagtgccttaagagagggaggactttagatatatatatatatttttgttttttgttttgaagaagccaaaatggaattatataaacacaa 13776061  T
Q  230 atagagcaattccgaaagcataaggtgtgcctttgagactacagcaaa-aaccaagttttatatcatagcacacgaacacagcaaaaacaacattagcca 328  Q
    | ||||||||| |||||| | ||||||||||||||| ||||| | ||| ||||||||||||   |||||||||| |||||| ||||||||||||||||||    
T  13776060 acagagcaatttcgaaagaacaaggtgtgcctttgaaactaccgtaaagaaccaagtttta---catagcacacaaacacaacaaaaacaacattagcca 13775964  T
Q  329 gtacccaaacacaaaagggtttgaccacctgccaaaaacaaaattatcttttttagctttcaaccaccctaaata 403  Q
     |  ||||||    |||   |||    | ||||||||||||||||||||| |||||||||| |||||||||||||    
T  13775963 cttaccaaac----aag---ttg----cgtgccaaaaacaaaattatcttatttagctttcgaccaccctaaata 13775900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 401
Target Start/End: Original strand, 43104765 - 43104984
Alignment:
Q  194 ttttgaagaagctaaaacggaattatataaacataaatagagcaattccgaaagcataaggtgtgcctttgagactacagcaaa-aaccaagttttatat 292  Q
    |||| ||||||| |||| |||||||||| ||||  || |||| ||| || |||| | ||| ||||||||||||||||| ||||| ||||||| |||  ||    
T  43104765 ttttaaagaagccaaaatggaattatattaacaataaaagagaaatccccaaagtacaagatgtgcctttgagactactgcaaagaaccaagctttgcat 43104864  T
Q  293 catagcacacgaacacagcaaaaacaacattagccagtacccaaac--acaaaagggtttgaccacc---------tgccaaaaacaaaattatcttttt 381  Q
    ||||| |||||||||||||  ||||||||||| ||| |||||||||  |||| |||||||||| |||          |||||||||||||  | ||||||    
T  43104865 catagtacacgaacacagctcaaacaacattaaccaatacccaaacaaacaagagggtttgactaccactgctcagagccaaaaacaaaacaagcttttt 43104964  T
Q  382 tagctttcaaccaccctaaa 401  Q
    ||||||||||||| ||||||    
T  43104965 tagctttcaaccatcctaaa 43104984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 13776336 - 13776241
Alignment:
Q  1 gatctttgatctcgaagatctacttcgaggcctcacattnnnnnnnnnnnnnnnncctatgtaaaatcaaaacacgggtgtgtttgtgttaattgg 96  Q
    ||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||| |||||||||||||||||||||    
T  13776336 gatctttgatctcgaagatctacttcgaggcctcacataaaaaataaaaaaaaaacctatgtaaaatcaaaacatgggtgtgtttgtgttaattgg 13776241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 46623336 - 46623376
Alignment:
Q  360 ccaaaaacaaaattatcttttttagctttcaaccaccctaa 400  Q
    |||||||||||| || ||||||||||||||||||| |||||    
T  46623336 ccaaaaacaaaagtagcttttttagctttcaaccatcctaa 46623376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 194 - 357
Target Start/End: Original strand, 4596340 - 4596506
Alignment:
Q  194 ttttgaagaagctaaaacggaattatataaacataaatagagcaattccgaaagcataaggtgtgcctttgagactacagcaaa-aaccaagttttatat 292  Q
    |||| ||||||| ||||  ||||||||| ||||  || |||||||| || |||||| ||| ||||||||||||||||| ||||| |||||||||||||||    
T  4596340 tttttaagaagccaaaattgaattatattaacaataaaagagcaatccccaaagcacaagatgtgcctttgagactacggcaaagaaccaagttttatat 4596439  T
Q  293 catagcacacgaacacagcaaaaacaacattagccagtacccaaac--acaaaagggtttgaccacc 357  Q
    ||||| |||| || |||||  ||||||||||||||| |||||||||  |||| ||||||||||||||    
T  4596440 catagtacacaaatacagctcaaacaacattagccaatacccaaacaaacaagagggtttgaccacc 4596506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 261 - 401
Target Start/End: Original strand, 28542524 - 28542676
Alignment:
Q  261 tttgagactacagcaaa-aaccaagttttatatcatagcacacgaacacagcaaaaacaacattagccagtacccaaac--acaaaagggtttgaccacc 357  Q
    ||||||||||| ||||| |||||||||||| ||||||| ||||||||||| |  ||||||||||||||| |||||||||  |||| ||||||||||||||    
T  28542524 tttgagactactgcaaagaaccaagttttacatcatagtacacgaacacaactcaaacaacattagccaatacccaaacaaacaagagggtttgaccacc 28542623  T
Q  358 ---------tgccaaaaacaaaattatcttttttagctttcaaccaccctaaa 401  Q
              |||||||||||||  | ||||||||||||||||||| ||||||    
T  28542624 actgctgaaagccaaaaacaaaacaagcttttttagctttcaaccatcctaaa 28542676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 28414 - 28329
Alignment:
Q  255 tgtgcctttgagactacagcaaa-aaccaagttttatatcatagcacacgaacacagcaaaaacaacattagccagtacccaaaca 339  Q
    |||||||||||||||||  |||| ||||||||||||||||||||  ||||||||||||  || |||||||||||| || |||||||    
T  28414 tgtgcctttgagactactccaaagaaccaagttttatatcatagtgcacgaacacagctcaagcaacattagccaataaccaaaca 28329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 401
Target Start/End: Complemental strand, 6264706 - 6264665
Alignment:
Q  360 ccaaaaacaaaattatcttttttagctttcaaccaccctaaa 401  Q
    |||||||||||| || ||||||||||||||||||| ||||||    
T  6264706 ccaaaaacaaaagtagcttttttagctttcaaccaacctaaa 6264665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University