View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15418_low_3 (Length: 292)

Name: NF15418_low_3
Description: NF15418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15418_low_3
NF15418_low_3
[»] scaffold0394 (1 HSPs)
scaffold0394 (256-292)||(5831-5867)
[»] chr8 (22 HSPs)
chr8 (256-292)||(3097207-3097243)
chr8 (256-292)||(3467605-3467641)
chr8 (256-292)||(30759306-30759342)
chr8 (256-292)||(40742196-40742232)
chr8 (256-292)||(44926912-44926948)
chr8 (259-292)||(22936797-22936830)
chr8 (256-292)||(4941782-4941818)
chr8 (256-292)||(25697961-25697997)
chr8 (256-288)||(38114520-38114552)
chr8 (258-292)||(8125042-8125076)
chr8 (256-290)||(27649819-27649853)
chr8 (256-290)||(30085640-30085674)
chr8 (256-292)||(440190-440226)
chr8 (256-292)||(3465441-3465477)
chr8 (256-292)||(6399109-6399145)
chr8 (256-292)||(24897589-24897625)
chr8 (256-292)||(25497763-25497799)
chr8 (256-292)||(26243196-26243232)
chr8 (256-288)||(36114042-36114074)
chr8 (256-292)||(36121546-36121582)
chr8 (256-292)||(41289059-41289095)
chr8 (256-292)||(42143365-42143401)
[»] chr7 (22 HSPs)
chr7 (256-292)||(3622448-3622484)
chr7 (256-292)||(3750771-3750807)
chr7 (256-292)||(10371946-10371982)
chr7 (256-292)||(43631684-43631720)
chr7 (256-292)||(44967387-44967423)
chr7 (256-292)||(48459795-48459831)
chr7 (256-290)||(37639517-37639551)
chr7 (256-292)||(3342875-3342911)
chr7 (256-292)||(3375575-3375611)
chr7 (256-292)||(34010424-34010460)
chr7 (256-292)||(36920166-36920202)
chr7 (256-288)||(42740481-42740513)
chr7 (256-292)||(46541685-46541721)
chr7 (256-288)||(47022008-47022040)
chr7 (256-292)||(47217529-47217565)
chr7 (259-292)||(9456189-9456222)
chr7 (259-292)||(24770902-24770935)
chr7 (256-289)||(48134667-48134700)
chr7 (256-288)||(386469-386501)
chr7 (260-292)||(12632075-12632107)
chr7 (256-292)||(37562655-37562691)
chr7 (256-292)||(38230153-38230189)
[»] chr6 (8 HSPs)
chr6 (256-292)||(10826155-10826191)
chr6 (256-292)||(13739269-13739305)
chr6 (256-292)||(13744769-13744805)
chr6 (256-292)||(17829999-17830035)
chr6 (256-292)||(33899006-33899042)
chr6 (256-292)||(15151506-15151542)
chr6 (256-292)||(21254880-21254916)
chr6 (256-292)||(29409252-29409288)
[»] chr5 (24 HSPs)
chr5 (256-292)||(2430295-2430331)
chr5 (256-292)||(7715018-7715054)
chr5 (256-292)||(8049049-8049085)
chr5 (256-292)||(32454614-32454650)
chr5 (256-292)||(39987965-39988001)
chr5 (259-292)||(41834970-41835003)
chr5 (256-292)||(9275482-9275518)
chr5 (256-292)||(10058152-10058188)
chr5 (256-292)||(13253081-13253117)
chr5 (256-292)||(22482267-22482303)
chr5 (256-292)||(24045908-24045944)
chr5 (256-288)||(32030796-32030828)
chr5 (256-292)||(40791068-40791104)
chr5 (256-292)||(42146385-42146421)
chr5 (258-292)||(5710386-5710420)
chr5 (259-292)||(3060225-3060258)
chr5 (255-292)||(16158462-16158499)
chr5 (256-292)||(3667932-3667968)
chr5 (256-292)||(27021206-27021242)
chr5 (256-292)||(33953900-33953936)
chr5 (256-292)||(35760267-35760303)
chr5 (256-292)||(35847888-35847924)
chr5 (256-292)||(40495356-40495392)
chr5 (256-292)||(40885289-40885325)
[»] chr4 (36 HSPs)
chr4 (256-292)||(13167574-13167610)
chr4 (256-292)||(16566354-16566390)
chr4 (256-292)||(28987067-28987103)
chr4 (256-292)||(43772124-43772160)
chr4 (256-292)||(43781520-43781556)
chr4 (256-292)||(48407699-48407735)
chr4 (256-292)||(48908322-48908358)
chr4 (256-292)||(49519779-49519815)
chr4 (256-292)||(51922989-51923025)
chr4 (259-292)||(26651852-26651885)
chr4 (256-292)||(4954052-4954088)
chr4 (256-292)||(6505250-6505286)
chr4 (256-292)||(9889336-9889372)
chr4 (256-292)||(14072551-14072587)
chr4 (256-292)||(14564147-14564183)
chr4 (256-292)||(15619663-15619699)
chr4 (256-292)||(19592232-19592268)
chr4 (256-292)||(25312764-25312800)
chr4 (256-292)||(26426116-26426152)
chr4 (256-292)||(30842180-30842216)
chr4 (256-292)||(32238060-32238096)
chr4 (256-292)||(33574227-33574263)
chr4 (256-288)||(39187787-39187819)
chr4 (256-292)||(39636834-39636870)
chr4 (256-292)||(42944899-42944935)
chr4 (256-292)||(49136571-49136607)
chr4 (256-292)||(54150575-54150611)
chr4 (256-292)||(54153093-54153129)
chr4 (256-292)||(55638756-55638792)
chr4 (256-292)||(6138621-6138657)
chr4 (256-292)||(19599497-19599533)
chr4 (256-292)||(29149308-29149344)
chr4 (256-292)||(46830070-46830106)
chr4 (256-292)||(46926097-46926133)
chr4 (256-292)||(46958072-46958108)
chr4 (256-292)||(48550428-48550464)
[»] chr3 (25 HSPs)
chr3 (256-292)||(8424731-8424767)
chr3 (256-292)||(10853268-10853304)
chr3 (256-292)||(21225054-21225090)
chr3 (256-292)||(23496381-23496417)
chr3 (256-292)||(38172308-38172344)
chr3 (256-292)||(42318393-42318429)
chr3 (256-292)||(50664822-50664858)
chr3 (256-292)||(53074966-53075002)
chr3 (256-288)||(10334206-10334238)
chr3 (256-292)||(19877481-19877517)
chr3 (256-292)||(29716687-29716723)
chr3 (256-292)||(35425397-35425433)
chr3 (256-292)||(42475773-42475809)
chr3 (256-292)||(48189443-48189479)
chr3 (256-292)||(55154565-55154601)
chr3 (258-292)||(15511379-15511413)
chr3 (256-290)||(52966810-52966844)
chr3 (256-289)||(38125443-38125476)
chr3 (259-292)||(38340869-38340902)
chr3 (256-292)||(4984645-4984681)
chr3 (256-292)||(26519728-26519764)
chr3 (256-292)||(30811533-30811569)
chr3 (256-292)||(35930802-35930838)
chr3 (256-292)||(44224826-44224862)
chr3 (256-292)||(52813279-52813315)
[»] chr2 (28 HSPs)
chr2 (256-292)||(1945038-1945074)
chr2 (256-292)||(2213720-2213756)
chr2 (256-292)||(7472673-7472709)
chr2 (256-292)||(32502058-32502094)
chr2 (256-292)||(41580709-41580745)
chr2 (256-292)||(44619060-44619096)
chr2 (256-290)||(31562686-31562720)
chr2 (259-292)||(38600445-38600478)
chr2 (256-292)||(2215325-2215361)
chr2 (256-292)||(7296228-7296264)
chr2 (256-292)||(8170385-8170421)
chr2 (256-292)||(9988500-9988536)
chr2 (256-292)||(23358331-23358367)
chr2 (256-292)||(25747881-25747917)
chr2 (256-292)||(28261367-28261403)
chr2 (256-292)||(30007552-30007588)
chr2 (256-292)||(36548272-36548308)
chr2 (256-292)||(39141469-39141505)
chr2 (256-292)||(42515975-42516011)
chr2 (261-292)||(5916246-5916277)
chr2 (261-292)||(36312349-36312380)
chr2 (256-292)||(2213579-2213615)
chr2 (256-292)||(7295347-7295383)
chr2 (256-292)||(14821235-14821271)
chr2 (256-292)||(23267363-23267399)
chr2 (256-292)||(31224753-31224789)
chr2 (256-292)||(34433305-34433341)
chr2 (256-292)||(45714667-45714703)
[»] chr1 (26 HSPs)
chr1 (256-292)||(11023332-11023368)
chr1 (256-292)||(31223462-31223498)
chr1 (256-292)||(1199915-1199951)
chr1 (256-292)||(4369805-4369841)
chr1 (256-292)||(10470677-10470713)
chr1 (256-292)||(15884315-15884351)
chr1 (256-292)||(20800279-20800315)
chr1 (256-292)||(35569204-35569240)
chr1 (256-292)||(43134538-43134574)
chr1 (256-292)||(43728880-43728916)
chr1 (256-292)||(47123474-47123510)
chr1 (256-292)||(48510996-48511032)
chr1 (256-292)||(49242984-49243020)
chr1 (256-291)||(7826356-7826391)
chr1 (257-292)||(25230094-25230129)
chr1 (258-292)||(13056085-13056119)
chr1 (258-292)||(50977344-50977378)
chr1 (256-289)||(36205282-36205315)
chr1 (256-292)||(6166197-6166233)
chr1 (256-292)||(11561910-11561946)
chr1 (256-292)||(12247507-12247543)
chr1 (256-292)||(12468300-12468336)
chr1 (256-292)||(29441272-29441308)
chr1 (256-292)||(34718539-34718575)
chr1 (256-292)||(42850221-42850257)
chr1 (256-292)||(45710136-45710172)
[»] scaffold0381 (1 HSPs)
scaffold0381 (256-292)||(9174-9210)
[»] scaffold0005 (1 HSPs)
scaffold0005 (256-292)||(253192-253228)
[»] scaffold0007 (1 HSPs)
scaffold0007 (259-292)||(29127-29160)
[»] scaffold0983 (1 HSPs)
scaffold0983 (256-292)||(2269-2305)
[»] scaffold0369 (1 HSPs)
scaffold0369 (256-292)||(8513-8549)


Alignment Details
Target: scaffold0394 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 5831 - 5867
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  5831 ttgagtttgagagaattgattttggttaaaagtgagt 5867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 3097207 - 3097243
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  3097207 ttgagtttgagagaattgattttggttaaaagtgagt 3097243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 3467641 - 3467605
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  3467641 ttgagtttgagagaattgattttggttaaaagtgagt 3467605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 30759306 - 30759342
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  30759306 ttgagtttgagagaattgattttggttaaaagtgagt 30759342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 40742232 - 40742196
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  40742232 ttgagtttgagagaattgattttggttaaaagtgagt 40742196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 44926948 - 44926912
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  44926948 ttgagtttgagagaattgattttggttaaaagtgagt 44926912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 22936797 - 22936830
Alignment:
Q  259 agtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||||||||||||||||||    
T  22936797 agtttgagagaattgattttggttaaaagtgagt 22936830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 4941782 - 4941818
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  4941782 ttgagtttgagagaattgattttgattaaaagtgagt 4941818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 25697961 - 25697997
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  25697961 ttgagtttgagagaattgattttgcttaaaagtgagt 25697997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 38114552 - 38114520
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagt 288  Q
    |||||||||||||||||||||||||||||||||    
T  38114552 ttgagtttgagagaattgattttggttaaaagt 38114520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 292
Target Start/End: Complemental strand, 8125076 - 8125042
Alignment:
Q  258 gagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||| ||||||||    
T  8125076 gagtttgagagaattgattttggttagaagtgagt 8125042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Complemental strand, 27649853 - 27649819
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtga 290  Q
    |||||||||| ||||||||||||||||||||||||    
T  27649853 ttgagtttgaaagaattgattttggttaaaagtga 27649819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 30085640 - 30085674
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtga 290  Q
    |||||||| ||||||||||||||||||||||||||    
T  30085640 ttgagtttaagagaattgattttggttaaaagtga 30085674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 440190 - 440226
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  440190 ttgagtctgagagaattgattttggttaaatgtgagt 440226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 3465441 - 3465477
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  3465441 ttgagtttgagtgaattgattttggttagaagtgagt 3465477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 6399109 - 6399145
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||| |||||||||| |||||||||||||||    
T  6399109 ttgagtttgatagaattgattatggttaaaagtgagt 6399145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 24897589 - 24897625
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||  |||||||||||||||||||||||||||    
T  24897589 ttgagtttatgagaattgattttggttaaaagtgagt 24897625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 25497799 - 25497763
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||  |||||||||||||||||||||||||||    
T  25497799 ttgagtttaggagaattgattttggttaaaagtgagt 25497763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 26243232 - 26243196
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||| |||||||||||||| |||||||||||||    
T  26243232 ttgagtttaagagaattgatttttgttaaaagtgagt 26243196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 36114042 - 36114074
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagt 288  Q
    |||||||||||||||||||||||| ||||||||    
T  36114042 ttgagtttgagagaattgattttgattaaaagt 36114074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 36121546 - 36121582
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||| || |||||||||||||||||||||||||    
T  36121546 ttgagtttaagtgaattgattttggttaaaagtgagt 36121582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 41289059 - 41289095
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||  ||||||||||||    
T  41289059 ttgagtttgagagaattgattttaattaaaagtgagt 41289095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 42143365 - 42143401
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||| |||||||||| |||||||||||||    
T  42143365 ttgagtttgagaaaattgattttagttaaaagtgagt 42143401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 3622448 - 3622484
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  3622448 ttgagtttgagagaattgattttggttaaaagtgagt 3622484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 3750807 - 3750771
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  3750807 ttgagtttgagagaattgattttggttaaaagtgagt 3750771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 10371946 - 10371982
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  10371946 ttgagtttgagagaattgattttggttaaaagtgagt 10371982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 43631684 - 43631720
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  43631684 ttgagtttgagagaattgattttggttaaaagtgagt 43631720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 44967387 - 44967423
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  44967387 ttgagtttgagagaattgattttggttaaaagtgagt 44967423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 48459831 - 48459795
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  48459831 ttgagtttgagagaattgattttggttaaaagtgagt 48459795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 290
Target Start/End: Complemental strand, 37639551 - 37639517
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtga 290  Q
    |||||||||||||||||||||||||||||||||||    
T  37639551 ttgagtttgagagaattgattttggttaaaagtga 37639517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 3342911 - 3342875
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||||||| |||||||||||||    
T  3342911 ttgagtttgagagaattgattttagttaaaagtgagt 3342875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 3375611 - 3375575
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||| |||||||||||||||||||    
T  3375611 ttgagtttgagagaattaattttggttaaaagtgagt 3375575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 34010460 - 34010424
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||| ||||||||||||||||||||||||||    
T  34010460 ttgagtttgaaagaattgattttggttaaaagtgagt 34010424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 36920166 - 36920202
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||| ||||||||||||||||||||||||||    
T  36920166 ttgagtttgaaagaattgattttggttaaaagtgagt 36920202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 42740513 - 42740481
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagt 288  Q
    |||||||||||||||||||||||||||||||||    
T  42740513 ttgagtttgagagaattgattttggttaaaagt 42740481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 46541721 - 46541685
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||| ||||||||    
T  46541721 ttgagtttgagagaattgattttggttagaagtgagt 46541685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 47022040 - 47022008
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagt 288  Q
    |||||||||||||||||||||||||||||||||    
T  47022040 ttgagtttgagagaattgattttggttaaaagt 47022008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 47217529 - 47217565
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  47217529 ttgagtttgagagaattgattttgattaaaagtgagt 47217565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 9456222 - 9456189
Alignment:
Q  259 agtttgagagaattgattttggttaaaagtgagt 292  Q
    |||| |||||||||||||||||||||||||||||    
T  9456222 agttcgagagaattgattttggttaaaagtgagt 9456189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 24770902 - 24770935
Alignment:
Q  259 agtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||| ||||||||||||||||||||||||    
T  24770902 agtttgagataattgattttggttaaaagtgagt 24770935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 48134700 - 48134667
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtg 289  Q
    ||||||||||||||||||||||| ||||||||||    
T  48134700 ttgagtttgagagaattgatttttgttaaaagtg 48134667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 386469 - 386501
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagt 288  Q
    ||||||||||||| |||||||||||||||||||    
T  386469 ttgagtttgagagtattgattttggttaaaagt 386501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 12632075 - 12632107
Alignment:
Q  260 gtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||| ||||||||||||||||||||    
T  12632075 gtttgagagaatagattttggttaaaagtgagt 12632107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 37562691 - 37562655
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||| |||||||||||||| |||||||||||||    
T  37562691 ttgagtttaagagaattgatttttgttaaaagtgagt 37562655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 38230189 - 38230153
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  38230189 ttgaatttaagagaattgattttggttaaaagtgagt 38230153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 10826191 - 10826155
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  10826191 ttgagtttgagagaattgattttggttaaaagtgagt 10826155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 13739305 - 13739269
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  13739305 ttgagtttgagagaattgattttggttaaaagtgagt 13739269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 13744805 - 13744769
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  13744805 ttgagtttgagagaattgattttggttaaaagtgagt 13744769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 17829999 - 17830035
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  17829999 ttgagtttgagagaattgattttggttaaaagtgagt 17830035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 33899006 - 33899042
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  33899006 ttgagtttgagagaattgattttgattaaaagtgagt 33899042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 15151506 - 15151542
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  15151506 ttgagtttgagtgaattgattttggttagaagtgagt 15151542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 21254880 - 21254916
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  21254880 ttgagtttgagagaattgaatttgattaaaagtgagt 21254916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 29409252 - 29409288
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  29409252 ttgagtttgaaagaattgattttgattaaaagtgagt 29409288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 2430295 - 2430331
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  2430295 ttgagtttgagagaattgattttggttaaaagtgagt 2430331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 7715054 - 7715018
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  7715054 ttgagtttgagagaattgattttggttaaaagtgagt 7715018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 8049049 - 8049085
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  8049049 ttgagtttgagagaattgattttggttaaaagtgagt 8049085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 32454650 - 32454614
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  32454650 ttgagtttgagagaattgattttggttaaaagtgagt 32454614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 39987965 - 39988001
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  39987965 ttgagtttgagagaattgattttggttaaaagtgagt 39988001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 41835003 - 41834970
Alignment:
Q  259 agtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||||||||||||||||||    
T  41835003 agtttgagagaattgattttggttaaaagtgagt 41834970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 9275482 - 9275518
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||| ||||||||||||||||||||||||||||    
T  9275482 ttgagtttaagagaattgattttggttaaaagtgagt 9275518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 10058188 - 10058152
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||| |||||||||||||||||||||||    
T  10058188 ttgagtttgagagtattgattttggttaaaagtgagt 10058152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 13253081 - 13253117
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||| ||||||||||||||||||||||||||    
T  13253081 ttgagtttgaaagaattgattttggttaaaagtgagt 13253117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 22482303 - 22482267
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||| ||||||||||||||||||||||||||||||||    
T  22482303 ttgattttgagagaattgattttggttaaaagtgagt 22482267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 24045944 - 24045908
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||| ||||||||||||||||||||||||||||||||    
T  24045944 ttgaatttgagagaattgattttggttaaaagtgagt 24045908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 32030828 - 32030796
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagt 288  Q
    |||||||||||||||||||||||||||||||||    
T  32030828 ttgagtttgagagaattgattttggttaaaagt 32030796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 40791068 - 40791104
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||| ||||||||||||||||||||||||    
T  40791068 ttgagtttgagaaaattgattttggttaaaagtgagt 40791104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 42146421 - 42146385
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||| ||||||||||||||||||||||||    
T  42146421 ttgagtttgagaaaattgattttggttaaaagtgagt 42146385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 5710386 - 5710420
Alignment:
Q  258 gagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||| ||||||||||||||||||||||||||    
T  5710386 gagtttgaaagaattgattttggttaaaagtgagt 5710420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 3060225 - 3060258
Alignment:
Q  259 agtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||||| ||||||||||||    
T  3060225 agtttgagagaattgattttgattaaaagtgagt 3060258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 16158462 - 16158499
Alignment:
Q  255 tttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  16158462 tttgagtttgaaagaattgattttgattaaaagtgagt 16158499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 3667968 - 3667932
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| | ||||||||||    
T  3667968 ttgagtttgagagaattgattttgttaaaaagtgagt 3667932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 27021242 - 27021206
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||| |||||||||||||||||| |||||    
T  27021242 ttgagtttgagaaaattgattttggttaaaaatgagt 27021206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 33953900 - 33953936
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||  ||||||||||||    
T  33953900 ttgagtttgagagaattgattttatttaaaagtgagt 33953936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 35760303 - 35760267
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| | ||||||||||    
T  35760303 ttgagtttgagagaattgattttgctaaaaagtgagt 35760267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 35847888 - 35847924
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  35847888 ttgagtttgagtgaattgattttggttagaagtgagt 35847924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 40495356 - 40495392
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||| | ||||||||||||||||||||||||    
T  40495356 ttgagtttgatataattgattttggttaaaagtgagt 40495392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 40885325 - 40885289
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  40885325 ttgagtttaagagaattgattttgattaaaagtgagt 40885289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 13167610 - 13167574
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  13167610 ttgagtttgagagaattgattttggttaaaagtgagt 13167574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 16566390 - 16566354
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  16566390 ttgagtttgagagaattgattttggttaaaagtgagt 16566354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 28987103 - 28987067
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  28987103 ttgagtttgagagaattgattttggttaaaagtgagt 28987067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 43772124 - 43772160
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  43772124 ttgagtttgagagaattgattttggttaaaagtgagt 43772160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 43781520 - 43781556
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  43781520 ttgagtttgagagaattgattttggttaaaagtgagt 43781556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 48407699 - 48407735
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  48407699 ttgagtttgagagaattgattttggttaaaagtgagt 48407735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 48908358 - 48908322
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  48908358 ttgagtttgagagaattgattttggttaaaagtgagt 48908322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 49519815 - 49519779
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  49519815 ttgagtttgagagaattgattttggttaaaagtgagt 49519779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 51923025 - 51922989
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  51923025 ttgagtttgagagaattgattttggttaaaagtgagt 51922989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 26651852 - 26651885
Alignment:
Q  259 agtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||||||||||||||||||    
T  26651852 agtttgagagaattgattttggttaaaagtgagt 26651885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 4954052 - 4954088
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||| ||||||||||||||||||||||||||||||||    
T  4954052 ttgattttgagagaattgattttggttaaaagtgagt 4954088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 6505286 - 6505250
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||||||||||||||| |||||    
T  6505286 ttgagtttgagagaattgattttggttaaaaatgagt 6505250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 9889336 - 9889372
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  9889336 ttgagtttgagagaattgattttgattaaaagtgagt 9889372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 14072587 - 14072551
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  14072587 ttgagtttgagagaattgattttgtttaaaagtgagt 14072551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 14564147 - 14564183
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||| ||||||    
T  14564147 ttgagtttgagagaattgattttggttaaatgtgagt 14564183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 15619699 - 15619663
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||| ||||||||||    
T  15619699 ttgagtttgagagaattgattttggtaaaaagtgagt 15619663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 19592232 - 19592268
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||| ||||||||||||||||||||||||||||    
T  19592232 ttgagttttagagaattgattttggttaaaagtgagt 19592268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 25312800 - 25312764
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  25312800 ttgagtttgagagaattgattttgattaaaagtgagt 25312764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 26426116 - 26426152
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||| ||||||||||||||||||||||||    
T  26426116 ttgagtttgagaaaattgattttggttaaaagtgagt 26426152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 30842216 - 30842180
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  30842216 ttgagtttgagagaattgattttgattaaaagtgagt 30842180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 32238060 - 32238096
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||| |||||||||||||||||||||||||    
T  32238060 ttgagtttgagtgaattgattttggttaaaagtgagt 32238096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 33574263 - 33574227
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||| |||||||||||||||||||    
T  33574263 ttgagtttgagagaattaattttggttaaaagtgagt 33574227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 39187819 - 39187787
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagt 288  Q
    |||||||||||||||||||||||||||||||||    
T  39187819 ttgagtttgagagaattgattttggttaaaagt 39187787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 39636870 - 39636834
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  39636870 ttgagtttgagagaattgattttgattaaaagtgagt 39636834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 42944899 - 42944935
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||| ||||||||||||||||||||||||||||||||    
T  42944899 ttgattttgagagaattgattttggttaaaagtgagt 42944935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 49136607 - 49136571
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||||| |||||||||||||||    
T  49136607 ttgagtttgagagaattgattatggttaaaagtgagt 49136571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 54150611 - 54150575
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  54150611 ttgagtttgagagaattgattttgattaaaagtgagt 54150575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 54153129 - 54153093
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||| |||||||||||||||||||||||||    
T  54153129 ttgagtttgagtgaattgattttggttaaaagtgagt 54153093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 55638756 - 55638792
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||||||| |||||||||||||    
T  55638756 ttgagtttgagagaattgatttttgttaaaagtgagt 55638792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 6138621 - 6138657
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||| | ||||||||||||||||||||||||    
T  6138621 ttgagtttgaaataattgattttggttaaaagtgagt 6138657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 19599497 - 19599533
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||||||||  |||||||||||    
T  19599497 ttgagtttgagagaattgattttgaataaaagtgagt 19599533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 29149308 - 29149344
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| | ||||||||||    
T  29149308 ttgagtttgagagaattgattttgctaaaaagtgagt 29149344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 46830070 - 46830106
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||| || |||||||||||||||||||||||||    
T  46830070 ttgagtttaagtgaattgattttggttaaaagtgagt 46830106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 46926133 - 46926097
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  46926133 ttgagtttgagaaaattgtttttggttaaaagtgagt 46926097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 46958108 - 46958072
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  46958108 ttgattttgatagaattgattttggttaaaagtgagt 46958072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 48550428 - 48550464
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  48550428 ttgattttgatagaattgattttggttaaaagtgagt 48550464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 8424731 - 8424767
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  8424731 ttgagtttgagagaattgattttggttaaaagtgagt 8424767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 10853268 - 10853304
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  10853268 ttgagtttgagagaattgattttggttaaaagtgagt 10853304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 21225090 - 21225054
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  21225090 ttgagtttgagagaattgattttggttaaaagtgagt 21225054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 23496417 - 23496381
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  23496417 ttgagtttgagagaattgattttggttaaaagtgagt 23496381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 38172308 - 38172344
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  38172308 ttgagtttgagagaattgattttggttaaaagtgagt 38172344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 42318429 - 42318393
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  42318429 ttgagtttgagagaattgattttggttaaaagtgagt 42318393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 50664858 - 50664822
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  50664858 ttgagtttgagagaattgattttggttaaaagtgagt 50664822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 53075002 - 53074966
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  53075002 ttgagtttgagagaattgattttggttaaaagtgagt 53074966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 10334238 - 10334206
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagt 288  Q
    |||||||||||||||||||||||||||||||||    
T  10334238 ttgagtttgagagaattgattttggttaaaagt 10334206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 19877517 - 19877481
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||| ||||||||||||||||||||||||||    
T  19877517 ttgagtttgaaagaattgattttggttaaaagtgagt 19877481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 29716687 - 29716723
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||| ||||||||||||||||||||||||||||||||    
T  29716687 ttgaatttgagagaattgattttggttaaaagtgagt 29716723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 35425433 - 35425397
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  35425433 ttgagtttgagagaattgattttgattaaaagtgagt 35425397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 42475809 - 42475773
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  42475809 ttgagtttgagagaattgattttgattaaaagtgagt 42475773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 48189443 - 48189479
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  48189443 ttgagtttgagagaattgattttgattaaaagtgagt 48189479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 55154601 - 55154565
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||||||| |||||||||||||    
T  55154601 ttgagtttgagagaattgattttagttaaaagtgagt 55154565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 15511379 - 15511413
Alignment:
Q  258 gagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||| ||||||||||||||||||||||||||    
T  15511379 gagtttgaaagaattgattttggttaaaagtgagt 15511413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 52966810 - 52966844
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtga 290  Q
    |||| ||||||||||||||||||||||||||||||    
T  52966810 ttgattttgagagaattgattttggttaaaagtga 52966844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 38125443 - 38125476
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtg 289  Q
    |||| |||||||||||||||||||||||||||||    
T  38125443 ttgaatttgagagaattgattttggttaaaagtg 38125476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 38340902 - 38340869
Alignment:
Q  259 agtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||| ||||||||||||||||||||||||||    
T  38340902 agtttgaaagaattgattttggttaaaagtgagt 38340869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 4984681 - 4984645
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  4984681 ttgaatttgagaaaattgattttggttaaaagtgagt 4984645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 26519764 - 26519728
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| | ||||||||||    
T  26519764 ttgagtttgagagaattgattttgctaaaaagtgagt 26519728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 30811533 - 30811569
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  30811533 ttgaatttgagagaattgattttgattaaaagtgagt 30811569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 35930838 - 35930802
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||  ||||||||||||    
T  35930838 ttgagtttgagagaattgatttttattaaaagtgagt 35930802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 44224862 - 44224826
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||| |||||||| |||||||||||||||    
T  44224862 ttgagtttgagataattgattatggttaaaagtgagt 44224826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 52813315 - 52813279
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  52813315 ttgagtttgagtgaattgattttggttagaagtgagt 52813279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 1945038 - 1945074
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  1945038 ttgagtttgagagaattgattttggttaaaagtgagt 1945074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 2213756 - 2213720
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  2213756 ttgagtttgagagaattgattttggttaaaagtgagt 2213720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 7472673 - 7472709
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  7472673 ttgagtttgagagaattgattttggttaaaagtgagt 7472709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 32502094 - 32502058
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  32502094 ttgagtttgagagaattgattttggttaaaagtgagt 32502058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 41580709 - 41580745
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  41580709 ttgagtttgagagaattgattttggttaaaagtgagt 41580745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 44619060 - 44619096
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  44619060 ttgagtttgagagaattgattttggttaaaagtgagt 44619096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 31562686 - 31562720
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtga 290  Q
    |||||||||||||||||||||||||||||||||||    
T  31562686 ttgagtttgagagaattgattttggttaaaagtga 31562720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 38600445 - 38600478
Alignment:
Q  259 agtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||||||||||||||||||    
T  38600445 agtttgagagaattgattttggttaaaagtgagt 38600478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 2215361 - 2215325
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||| |||||||||||||||||||||||||||||||    
T  2215361 ttgagcttgagagaattgattttggttaaaagtgagt 2215325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 7296264 - 7296228
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||||||||||||||| |||||    
T  7296264 ttgagtttgagagaattgattttggttaaaaatgagt 7296228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 8170421 - 8170385
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  8170421 ttgagtttgagagaattgattttgattaaaagtgagt 8170385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 9988500 - 9988536
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||||||| |||||||||||||    
T  9988500 ttgagtttgagagaattgatttttgttaaaagtgagt 9988536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 23358367 - 23358331
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  23358367 ttgagtttgagagaattgattttgattaaaagtgagt 23358331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 25747881 - 25747917
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  25747881 ttgagtttgagagaattgattttgattaaaagtgagt 25747917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 28261403 - 28261367
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  28261403 ttgagtttgagagaattgattttgcttaaaagtgagt 28261367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 30007552 - 30007588
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||| |||||||||||||||||||    
T  30007552 ttgagtttgagagaattaattttggttaaaagtgagt 30007588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 36548308 - 36548272
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  36548308 ttgagtttgagagaattgattttgattaaaagtgagt 36548272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 39141469 - 39141505
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||| ||||||||||||||||||||||||||    
T  39141469 ttgagtttgaaagaattgattttggttaaaagtgagt 39141505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 42515975 - 42516011
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||||||| |||||||||||||    
T  42515975 ttgagtttgagagaattgattttagttaaaagtgagt 42516011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 261 - 292
Target Start/End: Original strand, 5916246 - 5916277
Alignment:
Q  261 tttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||||||||||||||||    
T  5916246 tttgagagaattgattttggttaaaagtgagt 5916277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 261 - 292
Target Start/End: Complemental strand, 36312380 - 36312349
Alignment:
Q  261 tttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||||||||||||||||    
T  36312380 tttgagagaattgattttggttaaaagtgagt 36312349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 2213615 - 2213579
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| | ||||||||||    
T  2213615 ttgagtttgagagaattgattttgctaaaaagtgagt 2213579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 7295347 - 7295383
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  7295347 ttgagtttgagagaattgattctggttaaaaatgagt 7295383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 14821271 - 14821235
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  14821271 ttgagtttgagtgaattgattttagttaaaagtgagt 14821235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 23267363 - 23267399
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  23267363 ttgagtttgagtgaattgattttggttagaagtgagt 23267399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 31224789 - 31224753
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||| |||||||||||| |||||||||||||    
T  31224789 ttgagtttgaaagaattgattttagttaaaagtgagt 31224753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 34433305 - 34433341
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  34433305 ttgagtttgacagaattgattttgattaaaagtgagt 34433341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 45714667 - 45714703
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| |||||| |||||    
T  45714667 ttgagtttgagagaattgattttgattaaaaatgagt 45714703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 11023332 - 11023368
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  11023332 ttgagtttgagagaattgattttggttaaaagtgagt 11023368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 31223498 - 31223462
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||||||||||    
T  31223498 ttgagtttgagagaattgattttggttaaaagtgagt 31223462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 1199951 - 1199915
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||| |||||||||||||||||||    
T  1199951 ttgagtttgagagaattaattttggttaaaagtgagt 1199915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 4369805 - 4369841
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||| ||||||||||||||||||||||||||||||||    
T  4369805 ttgattttgagagaattgattttggttaaaagtgagt 4369841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 10470713 - 10470677
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  10470713 ttgagtttgagagaattgattttgattaaaagtgagt 10470677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 15884351 - 15884315
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||| ||||||||||||||||||||||||||    
T  15884351 ttgagtttgacagaattgattttggttaaaagtgagt 15884315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 20800279 - 20800315
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||| ||||||||||||||||||||||||||||||||    
T  20800279 ttgattttgagagaattgattttggttaaaagtgagt 20800315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 35569204 - 35569240
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||| ||||||||||||||||||||||||||||||||    
T  35569204 ttgattttgagagaattgattttggttaaaagtgagt 35569240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 43134574 - 43134538
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||| ||||||||||||||||||||||||||||    
T  43134574 ttgagtttaagagaattgattttggttaaaagtgagt 43134538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 43728880 - 43728916
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  43728880 ttgagtttgagagaattgattttgcttaaaagtgagt 43728916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 47123510 - 47123474
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  47123510 ttgagtttgagagaattgattttgattaaaagtgagt 47123474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 48511032 - 48510996
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||| ||||||||||||||||||||||||    
T  48511032 ttgagtttgagataattgattttggttaaaagtgagt 48510996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 49242984 - 49243020
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||||||||||||||||||||||| |||||    
T  49242984 ttgagtttgagagaattgattttggttaaaaatgagt 49243020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 256 - 291
Target Start/End: Original strand, 7826356 - 7826391
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgag 291  Q
    |||| |||||||||||||||||||||||||||||||    
T  7826356 ttgattttgagagaattgattttggttaaaagtgag 7826391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 25230129 - 25230094
Alignment:
Q  257 tgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||| |||||||||||||    
T  25230129 tgagtttgagagaattgattttagttaaaagtgagt 25230094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 292
Target Start/End: Complemental strand, 13056119 - 13056085
Alignment:
Q  258 gagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||| ||||||||||||||||||||||||||    
T  13056119 gagtttgaaagaattgattttggttaaaagtgagt 13056085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 292
Target Start/End: Original strand, 50977344 - 50977378
Alignment:
Q  258 gagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||| ||||||||||||||||||||||||||    
T  50977344 gagtttgaaagaattgattttggttaaaagtgagt 50977378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 36205315 - 36205282
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtg 289  Q
    |||||||||||||||||||||||| |||||||||    
T  36205315 ttgagtttgagagaattgattttgattaaaagtg 36205282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 6166233 - 6166197
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  6166233 ttgaatttgagagaattgattttggttagaagtgagt 6166197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 11561946 - 11561910
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||| |||||| |||||||||||||||||||    
T  11561946 ttgagtttgaaagaattaattttggttaaaagtgagt 11561910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 12247543 - 12247507
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||| |||||||||||| |||||||||||||||    
T  12247543 ttgagtttaagagaattgattctggttaaaagtgagt 12247507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 12468336 - 12468300
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||| | ||||||||||||||||||||||||    
T  12468336 ttgagtttgatataattgattttggttaaaagtgagt 12468300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 29441308 - 29441272
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  29441308 ttgagtttgagtgaattgattttggttagaagtgagt 29441272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 34718575 - 34718539
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||| |||| |||||||||||||||||||    
T  34718575 ttgagtttgagataattaattttggttaaaagtgagt 34718539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 42850221 - 42850257
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||| || |||||||||||||||||||||||||    
T  42850221 ttgagtttaagtgaattgattttggttaaaagtgagt 42850257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 45710172 - 45710136
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  45710172 ttgagtttgagtgaattgattttgattaaaagtgagt 45710136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 9210 - 9174
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||| ||||||||||||    
T  9210 ttgagtttgagagaattgattttgattaaaagtgagt 9174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 253228 - 253192
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||||||||||||||||||||||| ||||||    
T  253228 ttgagtttgagagaattgattttggttaaatgtgagt 253192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 29127 - 29160
Alignment:
Q  259 agtttgagagaattgattttggttaaaagtgagt 292  Q
    ||||||| ||||||||||||||||||||||||||    
T  29127 agtttgaaagaattgattttggttaaaagtgagt 29160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0983 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 2269 - 2305
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||| | ||||||||||||||||||||||||    
T  2269 ttgagtttgacataattgattttggttaaaagtgagt 2305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 8549 - 8513
Alignment:
Q  256 ttgagtttgagagaattgattttggttaaaagtgagt 292  Q
    |||||||||| | ||||||||||||||||||||||||    
T  8549 ttgagtttgatataattgattttggttaaaagtgagt 8513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University