View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15418_low_6 (Length: 245)
Name: NF15418_low_6
Description: NF15418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15418_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 78 - 231
Target Start/End: Complemental strand, 35368725 - 35368576
Alignment:
| Q |
78 |
ggcctttgactaaccaataaatattcatagcaaaatgaatcgaatcgaatcaacttgtcgcgtgttccactttatatgttctatacatccattatatgca |
177 |
Q |
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| T |
35368725 |
ggcctttgaataaccaataaatattcatagcaaaa---at-gaatcgaatcaacttgtcgcgtgttccactttatatgttctatacatccattatatgca |
35368630 |
T |
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| Q |
178 |
tccactcaaacattctattttgtcaatattcttgattcttagctgcaatttcca |
231 |
Q |
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| T |
35368629 |
tccactcaaacattctattttgtcaatattcttgattctttgctgctatttcca |
35368576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 35343134 - 35343198
Alignment:
| Q |
167 |
cattatatgcatccactcaaacattctattttgtcaatattcttgattcttagctgcaatttcca |
231 |
Q |
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| T |
35343134 |
cattatatgcatccactcaaacattctattttgtcaatattcttgattctttgctgctatttcca |
35343198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 35356183 - 35356101
Alignment:
| Q |
145 |
cactttatatgttctatacatccattatatgcatccactcaaacattctattttgtcaatattcttgattcttagctgcaatttcca |
231 |
Q |
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| T |
35356183 |
cactttatatgttcta--catccattaa--gcatccactcaaacattctattttgtcaatattcttgattcttagctgctatttcca |
35356101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 35374784 - 35374727
Alignment:
| Q |
174 |
tgcatccactcaaacattctattttgtcaatattcttgattcttagctgcaatttcca |
231 |
Q |
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| T |
35374784 |
tgcatccactcaaacattctattttgtcaatattcttgattcttagctgctatttcca |
35374727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 35336021 - 35335970
Alignment:
| Q |
166 |
ccattatatgcatccactcaaacattctattttgtcaatattcttgattctt |
217 |
Q |
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| T |
35336021 |
ccattatatgcatccactcaaacattttattttgtcaatattcttgattctt |
35335970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 35347807 - 35347856
Alignment:
| Q |
168 |
attatatgcatccactcaaacattctattttgtcaatattcttgattctt |
217 |
Q |
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| T |
35347807 |
attatatgcatccactcaaacattctattttgtcaatattcttgagtctt |
35347856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 35351605 - 35351556
Alignment:
| Q |
168 |
attatatgcatccactcaaacattctattttgtcaatattcttgattctt |
217 |
Q |
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| T |
35351605 |
attatatgcatccactcaaacattcgattttttcaatattcttgattctt |
35351556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 35346532 - 35346472
Alignment:
| Q |
168 |
attatatgcatccactcaaacattctattttgtcaatattcttgattcttagctgcaatttcca |
231 |
Q |
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| T |
35346532 |
attatatgcatccactcaaacattctatttggt---tattcttgattctatgctgcattttcca |
35346472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 35341188 - 35341156
Alignment:
| Q |
175 |
gcatccactcaaacattctattttgtcaatatt |
207 |
Q |
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| T |
35341188 |
gcatccactcaaacattctattttgtcaatatt |
35341156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 35372046 - 35372014
Alignment:
| Q |
86 |
actaaccaataaatattcatagcaaaatgaatc |
118 |
Q |
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| T |
35372046 |
actaaccaataaaaattcatagcaaaatgaatc |
35372014 |
T |
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