View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15419_high_1 (Length: 655)

Name: NF15419_high_1
Description: NF15419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15419_high_1
NF15419_high_1
[»] chr4 (1 HSPs)
chr4 (5-640)||(48626750-48627384)


Alignment Details
Target: chr4 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 5 - 640
Target Start/End: Complemental strand, 48627384 - 48626750
Alignment:
Q  5 tagttaaaagaaatggaagtgattgaaatgtaatcacatatgttggtgtcatgtttgtgttagacattgaacattgttctctattgcttctttactttta 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48627384 tagttaaaagaaatggaagtgattgaaatgtaatcacatatgttggtgtcatgtttgtgttagacattgaacattgttctctattgcttctttactttta 48627285  T
Q  105 aaatcctcttttcccctttatctttgtagtgaaacggttttgtgataaattgttttattggcaggttgcattcaaaagtggcgatttcaaacggcaagtt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48627284 aaatcctcttttcccctttatctttgtagtgaaacggttttgtgataaattgttttattggcaggttgcattcaaaagtggcgatttcaaacggcaagtt 48627185  T
Q  205 atttttattggtggattgactgatggatttcttgctaccgcgtaagttcaatatttgatcatttcttacattgaatatagtttaaagnnnnnnnnnnnnn 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  48627184 atttttattggtggattgactgatggatttcttgctaccgcgtaagttcaatatttgatcatttcttacattgaatatagtttaaag-tttttttttttt 48627086  T
Q  305 actgtgtcatcactcatccactaacaggagaaaatgtgaatttttcaagcatgtgaattcttagtataaaccttgaaatttatcgtgccaatgaatctat 404  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48627085 attgtgtcatcactcatccactaacaggagaaaatgtgaatttttcaagcatgtgaattcttagtataaaccttgaaatttatcgtgccaatgaatctat 48626986  T
Q  405 aattatgaacacattattactcagcaagtatcagaagaaattctttccnnnnnnnnngtatcagaagaaatataggccgttgtaatacatttggtgcacg 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||    
T  48626985 aattatgaacacattattactcagcaagtatcagaagaaattctttcaaaaaaaaaagtatcagaagaaatataggccgttgtaatacatttggtgcacg 48626886  T
Q  505 agctttgttatagtcttttgagcttattgttagtataatccttcaggagaaaaaatattatttatgatgatttatacaattgtggcctgcttctcaactc 604  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  48626885 agcattgttatagtcttttgagcttattgttagtataatccttcaggagaaaaaatattatttatgatgatctatacaattgtggcctgcttctcaactc 48626786  T
Q  605 cttctatgtgtctcaaaatctcttcatcggtctctg 640  Q
    ||||||||||||||||||||||||||| ||| ||||    
T  48626785 cttctatgtgtctcaaaatctcttcattggtatctg 48626750  T

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