View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15419_high_2 (Length: 405)
Name: NF15419_high_2
Description: NF15419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15419_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 237 - 390
Target Start/End: Complemental strand, 54748 - 54595
Alignment:
| Q |
237 |
tacacagttgttgttataggtatccaaggaggcactagtcggtaggtagcaagattcattgcattctctccttccctcactttggggtggatcattattt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54748 |
tacacagttgttgttataggtatccaaggaggcactagtcggtaggtagcaagattcattgcattctctccttccctcactttggggtggatcattattt |
54649 |
T |
|
| Q |
337 |
tccttttagagtgtcatttttctctctatcaaatattcaaagcaaacatgttaa |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54648 |
tccttttagagtgtcatttttctctctatcaaatattcaaagcaaacatgttaa |
54595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 54967 - 54777
Alignment:
| Q |
15 |
tattctacaaagaaagaattgtaataagaaaatgtcataattaggggtatcttacttttgaagcttagtgccttaatcnnnnnnnnnnnnnnctttgatg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
54967 |
tattctacaaagaaagaattgtaataagaaaatgtcataattaggggtatcttacttttgaagcttagtgccttaatctatatatata----ctttgatg |
54872 |
T |
|
| Q |
115 |
tttgatcgtatcctaattaagtataatatgagacatgtataagacaaattaacccgcatctatgtatagtcataaataagcaactgtgcatgcag |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54871 |
tttgatcgtatcctaattaagtataatatgagacatgtataagacaaattaacccacatctatgtatagtcataaataagcaactgtgcatgcag |
54777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University