View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15419_low_3 (Length: 369)
Name: NF15419_low_3
Description: NF15419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15419_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 354
Target Start/End: Complemental strand, 14966074 - 14965731
Alignment:
| Q |
9 |
gagatgaaggcaacaactgccaaaaatgtactactcaaagatcattcaatatcatcatcccaaagatcgcaggtcctgtaatataccacaaaatataaac |
108 |
Q |
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| T |
14966074 |
gagaagaatgcagcaactgccgaaagtgtactactcaaaagtcattcaatatcatcatcccaaagatcgcaggtcctgtaatataccacaaaatataaac |
14965975 |
T |
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| Q |
109 |
taatggtacttatactttttgttctaattttaacctagaagagagagaagagcactcaactcttgcttccaataggtcagaacacaatgtctcctaccag |
208 |
Q |
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|||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14965974 |
taatggtactta--ctttttattctaattttaacctagaaaagagagaagagcactcaactcttgcttccaataggtcagaacacaatgtctcctactag |
14965877 |
T |
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| Q |
209 |
taaaaacaaaagcatcaggaagagatagaagagcactcaacccttgcttctctctcatgacttatgccaagatccctcaatcgcacctccaatcatacta |
308 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
14965876 |
taaaaataaaagcatcaggaagagatagaagagcactcaacccttgcttctctctcatgacttctgccaagatccctcaatcgcacctccgatcatacta |
14965777 |
T |
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| Q |
309 |
gacaaacaatttactacatcatattattttctaatatgccatatat |
354 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14965776 |
gacaaacaatttactacatcatattatgttctaatatgccatatat |
14965731 |
T |
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