View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1541_high_12 (Length: 384)
Name: NF1541_high_12
Description: NF1541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1541_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 40666569 - 40666947
Alignment:
| Q |
1 |
aaattatttacgacgactatcaagaaaatcgataaattttgacgagactatttgtatttttataatttcttgtatggttttagcattctattgtt-actt |
99 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
40666569 |
aaattatttacgacaactatcaagaaaatcgataaattttgacgagactatttgtatttttataatttcttgtatggttttagcattctattttttactt |
40666668 |
T |
|
| Q |
100 |
caataattttgttacttttctgttccttcattttcgattaacagtgggataccagacattagcatgtcccgagtcttttgctggcaccaactttcgtgca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666669 |
caataattttgttacttttctgttccttcattttcgattaacagtgggataccagacattagcatgtcccgagtcttttgctggcaccaactttcgtgca |
40666768 |
T |
|
| Q |
200 |
atggaggaagaagtcagnnnnnnngtgcatgtatatgcaaatgagcttttatcatgtcttgaagattttgaaatccaaggggtatattttaggttctcaa |
299 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40666769 |
atggaggaagaagtcagaaaaaaagtgcatgtatatgcaaatgagcttttatcatgtcttgaagattttgaaatccaaggggtatattttaggttctcaa |
40666868 |
T |
|
| Q |
300 |
acctttgtaataatgtgtgagtattatttttaaccttgaagttgaaactaatataatagctatactatgatgatgtcca |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
40666869 |
acctttgtaataatgtgtgagtattatttttaaccttgaagttgaaactaatataatagctatactatgttcatgtcca |
40666947 |
T |
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