View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1541_high_17 (Length: 299)
Name: NF1541_high_17
Description: NF1541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1541_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 49127553 - 49127423
Alignment:
| Q |
9 |
gaagaatatgtagtatttcttgttttcaaattattgtgtaggaaatagtgaaaataaatgtcattttcatcatttcctatacgaaaattcgagaacaagt |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49127553 |
gaagaaaatgtagtatttcttgttttcaaattattgtgtaggaaatagtgaaaataaatgtcattttcatcatttcctatacgaaaattcgagaacaagt |
49127454 |
T |
|
| Q |
109 |
aaagtgaaaacaatgtggtatttttatgatt |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
49127453 |
aaagtgaaaacaatgtggtatttttatgatt |
49127423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 197 - 283
Target Start/End: Complemental strand, 49127365 - 49127279
Alignment:
| Q |
197 |
tgttatggatacagtcttcaaaaaagcgtcgaatttccatgatgcgatgaggtgcaagttccttgtagtcagtaaagtgcttatatt |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49127365 |
tgttatggatacagtcttcaaaaaagcgtcgaatttccatgatgcgatgaggtgcaagttccttgtagtcagtaaagtgcttatatt |
49127279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 281
Target Start/End: Original strand, 8799663 - 8799741
Alignment:
| Q |
203 |
ggatacagtcttcaaaaaagcgtcgaatttccatgatgcgatgaggtgcaagttccttgtagtcagtaaagtgcttata |
281 |
Q |
| |
|
|||||||||||||||| |||||| ||| ||||| | |||||||||| |||||| ||| |||||||| |||||||||| |
|
|
| T |
8799663 |
ggatacagtcttcaaagaagcgtttaatctccattaggcgatgaggttgaagttctttgaagtcagtatagtgcttata |
8799741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University