View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1541_high_25 (Length: 232)

Name: NF1541_high_25
Description: NF1541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1541_high_25
NF1541_high_25
[»] chr2 (4 HSPs)
chr2 (1-232)||(29746803-29747033)
chr2 (79-151)||(17862954-17863025)
chr2 (100-162)||(16879305-16879366)
chr2 (100-162)||(16991438-16991499)
[»] chr6 (3 HSPs)
chr6 (85-151)||(10863362-10863427)
chr6 (79-163)||(15594568-15594651)
chr6 (79-126)||(6634272-6634320)
[»] chr5 (3 HSPs)
chr5 (79-161)||(21098675-21098754)
chr5 (79-161)||(28739284-28739362)
chr5 (79-119)||(17304518-17304558)
[»] chr1 (2 HSPs)
chr1 (76-151)||(1945056-1945131)
chr1 (129-162)||(10216801-10216834)
[»] chr4 (3 HSPs)
chr4 (79-161)||(11042502-11042583)
chr4 (76-162)||(24854257-24854342)
chr4 (130-162)||(28085844-28085876)
[»] chr8 (1 HSPs)
chr8 (129-162)||(24716113-24716146)
[»] chr3 (1 HSPs)
chr3 (79-163)||(8677853-8677936)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 29746803 - 29747033
Alignment:
Q  1 acagagcaaaaaagccaccaaaactaactaattgaaacacatcctagaaatatcactcataaaaatctacatgtcatttgtaacactcatactaaattgt 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  29746803 acagagcaaaaaagccaccaaaactaactaatagaaacacatcctataaatatcactcataaaaatatacatgtcatttgtaacacccatactaaattgt 29746902  T
Q  101 ctagaatatttagtatgtgtattaaacattagtactaaatacattaaaatttacaacataaacttgtccaaataaatacatttataatacaagtttcgta 200  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  29746903 ctagaatatttagtatgtgtattaaacattagtactggatacattaaaatttacaacataaacttgtccaaataaatacatttctaatacaag-ttcgta 29747001  T
Q  201 catccaataaaatacatcatctgaaaaatata 232  Q
    |||||||||| ||||| |||||||||||||||    
T  29747002 catccaataacatacagcatctgaaaaatata 29747033  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 17862954 - 17863025
Alignment:
Q  79 tgtaacactcatactaaattgtctagaatatttagtatgtgtattaaacattagtactaaatacattaaaatt 151  Q
    |||||||| |||||||||||||||||||||||||| ||| ||||||||| ||| ||||  |||||||||||||    
T  17862954 tgtaacacccatactaaattgtctagaatatttagcatgcgtattaaac-ttactactggatacattaaaatt 17863025  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 16879366 - 16879305
Alignment:
Q  100 tctagaatatttagtatgtgtattaaacattagtactaaatacattaaaatttacaacataaa 162  Q
    |||||||  ||||||||||| ||||  | ||||||||| ||||||||||||||||||||||||    
T  16879366 tctagaaagtttagtatgtgcattat-ctttagtactagatacattaaaatttacaacataaa 16879305  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 16991499 - 16991438
Alignment:
Q  100 tctagaatatttagtatgtgtattaaacattagtactaaatacattaaaatttacaacataaa 162  Q
    |||||||  ||||||||||| ||||  | ||||||||| ||||||||||||||||||||||||    
T  16991499 tctagaaagtttagtatgtgcattat-ctttagtactagatacattaaaatttacaacataaa 16991438  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 10863427 - 10863362
Alignment:
Q  85 actcatactaaattgtctagaatatttagtatgtgtattaaacattagtactaaatacattaaaatt 151  Q
    |||||||||||| |||||||||||||||||||| ||||||||| |||||||| ||||||||||||||    
T  10863427 actcatactaaactgtctagaatatttagtatgcgtattaaac-ttagtactgaatacattaaaatt 10863362  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 15594651 - 15594568
Alignment:
Q  79 tgtaacactcatactaaat-tgtctagaatatttagtatgtgtattaaacattagtactaaatacattaaaatttacaacataaac 163  Q
    |||||||| |||||||||| | ||||||||| |||| |||||| |||    ||||||||  |||||||||||||||||||||||||    
T  15594651 tgtaacacccatactaaatgtatctagaatagttagcatgtgtgttatt--ttagtactggatacattaaaatttacaacataaac 15594568  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 6634272 - 6634320
Alignment:
Q  79 tgtaacactcatactaaat-tgtctagaatatttagtatgtgtattaaa 126  Q
    |||||||| |||||||||| |||||||||||||||| ||||| ||||||    
T  6634272 tgtaacacccatactaaatgtgtctagaatatttagcatgtggattaaa 6634320  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 21098675 - 21098754
Alignment:
Q  79 tgtaacactcatactaaattgtctagaatatttagtatgtgtattaaacattagtactaaatacattaaaatttacaacataa 161  Q
    |||||||| |||||||||||||||||||||||||| |||  | ||||   |||||||| |||||||||||| |||||||||||    
T  21098675 tgtaacacccatactaaattgtctagaatatttagcatgcatgttaa--cttagtactgaatacattaaaa-ttacaacataa 21098754  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 28739284 - 28739362
Alignment:
Q  79 tgtaacactcatactaaattgtctagaatatttagtatgtgtattaaacattagtactaaatacattaaaatttacaacataa 161  Q
    ||||||||||||||||||||||||||||| ||||| |||||  ||||   ||||||||  ||||||||||| |||||||||||    
T  28739284 tgtaacactcatactaaattgtctagaat-tttagcatgtgcgttaa--cttagtactggatacattaaaa-ttacaacataa 28739362  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 17304558 - 17304518
Alignment:
Q  79 tgtaacactcatactaaattgtctagaatatttagtatgtg 119  Q
    |||||||| ||||||||| |||||||||||||||| |||||    
T  17304558 tgtaacacacatactaaactgtctagaatatttagaatgtg 17304518  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 1945131 - 1945056
Alignment:
Q  76 atttgtaacactcatactaaattgtctagaatatttagtatgtgtattaaacat-tagtactaaatacattaaaatt 151  Q
    ||||||||||| |||||||||||||||| ||||||||  ||| || ||||||||  ||||||| |||||||||||||    
T  1945131 atttgtaacacccatactaaattgtctataatattta-aatgggtgttaaacataaagtactagatacattaaaatt 1945056  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 10216834 - 10216801
Alignment:
Q  129 ttagtactaaatacattaaaatttacaacataaa 162  Q
    |||||||| |||||||||||||||||||||||||    
T  10216834 ttagtactgaatacattaaaatttacaacataaa 10216801  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 11042583 - 11042502
Alignment:
Q  79 tgtaacactcatactaaattgtctagaatatttagtatgtgtattaaacat-tagtactaaatacattaaaatttacaacataa 161  Q
    |||||||||||||||||||||| |||||||||||| | | |||||||||||  |||| || || |||||||| |||||||||||    
T  11042583 tgtaacactcatactaaattgtttagaatatttag-acgagtattaaacataaagtattagatgcattaaaa-ttacaacataa 11042502  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 162
Target Start/End: Original strand, 24854257 - 24854342
Alignment:
Q  76 atttgtaacactcatactaaat-tgtctagaatatttagtatgtgtattaaacattagtactaaatacattaaaatttacaacataaa 162  Q
    ||||||||||| |||||||||  ||| |||||||||||| |||||  ||||   ||||||||  |||||||| |||||||||||||||    
T  24854257 atttgtaacacccatactaaacgtgtttagaatatttagcatgtgggttaac--ttagtactggatacattataatttacaacataaa 24854342  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 28085844 - 28085876
Alignment:
Q  130 tagtactaaatacattaaaatttacaacataaa 162  Q
    ||||||| |||||||||||||||||||||||||    
T  28085844 tagtactgaatacattaaaatttacaacataaa 28085876  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 24716146 - 24716113
Alignment:
Q  129 ttagtactaaatacattaaaatttacaacataaa 162  Q
    ||||||||| ||||||||||||||||||||||||    
T  24716146 ttagtactagatacattaaaatttacaacataaa 24716113  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 8677853 - 8677936
Alignment:
Q  79 tgtaacactcatactaaattg-tctagaatatttagtatgtgtattaaacattagtactaaatacattaaaatttacaacataaac 163  Q
    ||||| || |||||||||||  |||||||||||||| |||||  |||||| ||||||||  ||||||||||| |||||||||||||    
T  8677853 tgtaaaacccatactaaatttatctagaatatttagcatgtgcgttaaac-ttagtacttgatacattaaaa-ttacaacataaac 8677936  T

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