View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1541_high_28 (Length: 208)
Name: NF1541_high_28
Description: NF1541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1541_high_28 |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 42559150 - 42558962
Alignment:
| Q |
1 |
cctgaatttgtgagtaactccaattttttgagatctctcttactaccaatctcacagacttgaatgattcttctacgatcctttataatttttacccaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42559150 |
cctgaatttgtgagtaactccaattttttgagatctcccttactaccaatctcacagacttgaatgattcttctacgatcctttataatttttacccaat |
42559051 |
T |
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| Q |
101 |
tgcgttttagtatgattttcatgatttccttttagaatattctttttccatttcagcaaagtaaaataaatttttattctctaccttat |
189 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
42559050 |
tgcgttttagtatgattttcatgattttcttttagaatattctttttccatttcagcaaagtaaagtaaatttttattctctactttat |
42558962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 20704232 - 20704435
Alignment:
| Q |
1 |
cctgaatttgtgagtaactccaattttttgagatctctcttactaccaatc--------------tcacagacttgaatgattcttctacgatcctttat |
86 |
Q |
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| T |
20704232 |
cctgaatttgtgagtaacttcaattttttgagatctctcttacaaccaatcactcaatttcatactcacggacttgagtgattcttctacaatcctttat |
20704331 |
T |
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| Q |
87 |
aattt-ttacccaattgcgttttagtatgattttcatgatttccttttagaatattctttttccatttcagcaaagtaaaataaatttttattctctacc |
185 |
Q |
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||||| ||||| || |||||||| ||||||||||||| ||||||||| ||||||||| |||||||||||| ||||||||| |||||||||||||||||| |
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| T |
20704332 |
aatttcttacctaactgcgttttggtatgattttcattatttcctttgagaatattcattttccatttcaacaaagtaaagtaaatttttattctctact |
20704431 |
T |
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| Q |
186 |
ttat |
189 |
Q |
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|||| |
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| T |
20704432 |
ttat |
20704435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 20706928 - 20707123
Alignment:
| Q |
1 |
cctgaatttgtgagtaactccaattttttgagatctctcttactaccaatctc--------------acagacttgaatgattcttctacgatcctttat |
86 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
20706928 |
cctgaatttgtgagtaactccaattttttgagatctctcttacgaccaatcactcaatttcatactgacagacttgaatgattcttctacgatcctttat |
20707027 |
T |
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| Q |
87 |
aatttttacccaattgcgttttagtatgattttcatgatttccttttagaatattctttttccatttcagcaaagtaaaataaatttttattctcta |
183 |
Q |
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| T |
20707028 |
aatttcttactaattgcgttttcgtacgattttcattatttcattttagaatattc-ttttccattttgacaaagtaaagtaaatttttattctcta |
20707123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 11002 - 11197
Alignment:
| Q |
1 |
cctgaatttgtgagtaactccaattttttgagatctctcttactaccaatctc--------------acagacttgaatgattcttctacgatcctttat |
86 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
11002 |
cctgaatttgtgagtaactccaattttttgagatctctcttacgaccaatcactcaatttcatactgacagacttgaatgattcttctacgatcctttat |
11101 |
T |
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| Q |
87 |
aatttttacccaattgcgttttagtatgattttcatgatttccttttagaatattctttttccatttcagcaaagtaaaataaatttttattctcta |
183 |
Q |
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||||| | | ||||||||||| ||| ||||||||| ||||| ||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |
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| T |
11102 |
aatttcttactaattgcgttttcgtacgattttcattatttcattttagaatattc-ttttccattttgacaaagtaaagtaaatttttattctcta |
11197 |
T |
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