View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1541_high_3 (Length: 488)
Name: NF1541_high_3
Description: NF1541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1541_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Original strand, 46357672 - 46358136
Alignment:
| Q |
19 |
ctaaaactagggttgattctcaatcaatcttgcgtactcaggtaaataaacatcaaatttaaatgctaattttgtttatatatggcatgaattaattaat |
118 |
Q |
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| T |
46357672 |
ctaaaactagggttgattctcaattaatcttgcgtactcaggtaaataaacatcaaatttaaatgctaattttgtttatatatggcatgaattaattaat |
46357771 |
T |
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| Q |
119 |
ggatgctgaattgaaattcaaatcagatgttatgaatttagattgagctaagaatggaaatattcaatgtgatttgtattgaggtgattctgannnnnnn |
218 |
Q |
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| T |
46357772 |
ggatgctgaattgaaattcaaatcagatgttatgaatttagattgagctaagaatggaaatatttaatgtgatttgtattgaagtgattctaatatttat |
46357871 |
T |
|
| Q |
219 |
n------ggcaggttgcaatgtcaaggagattgagtgatgtgaaaagccgaaaatcagatgacaatgattcttcttctgtggatgagaatactatagact |
312 |
Q |
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| T |
46357872 |
tttttttggcaggttgcaatgtcaaggagattgagtgatgtgaaaagccgaaaatcagatgacaatgattcttcttctgtggatgagaatactatagact |
46357971 |
T |
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| Q |
313 |
cttctcctcaaagttgtttggaggtagagaaacccaagtttgcaggtttaggtggcattacaattcatgaaaagaaatggactgatggaagtgttcctct |
412 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46357972 |
cttctcctcaaagttgtttggatttagagaaacccaagtttgcaggtttaggtggcattacaattcatgaaaagaaatggactgatggaagtgttcctct |
46358071 |
T |
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| Q |
413 |
tgatgctgtgtctggcaaactttcaaggcttggaaaggtattaattttggaaatttaacattcat |
477 |
Q |
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| T |
46358072 |
tgatgctgtgtctggcaaactttcaaggcttggaaaggtattaattttggaaatttaacattcat |
46358136 |
T |
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