View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1541_high_6 (Length: 435)
Name: NF1541_high_6
Description: NF1541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1541_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 27805856 - 27806226
Alignment:
| Q |
1 |
ttgtgatgtttctaatggaaatgagaaggttaagaatgttgcttctgttgggttttgtgagcttttcagatttgctgatgggttagattatgttcttatg |
100 |
Q |
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| T |
27805856 |
ttgtgatgtttctaatggaaatgagaaggttaagaatgttgcttctgttgggttttgtgagcttttcagatttgctgatggattggattatgttcttatg |
27805955 |
T |
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| Q |
101 |
ataattggaagtttaggagctgttgttcatggttgttctttgccactgtttcttcggttttttgctgatcttgttaattcttttggttctaatgctaata |
200 |
Q |
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| T |
27805956 |
ataattggaagtttaggagctgttgttcatggttgttctttgccactgtttcttcggttttttgctgatcttgttaattcttttggttctaatgctaata |
27806055 |
T |
|
| Q |
201 |
atttggataagatgactcaagaagttgctaaggtaagaaacttataattgagtttaaagttttattctttatagtgaaaattttgaagg----nnnnnnn |
296 |
Q |
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| T |
27806056 |
atttagataagatgacccaagaagttgctaaggtaagaaacttataattgagtctaaagttttattctttatagtgaaaattttgaaggttttttttttt |
27806155 |
T |
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| Q |
297 |
gttgttgtagtatgctctttactttctggtcgttggtgctgctatttgggcatcttcatgggcaggtgaag |
367 |
Q |
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| T |
27806156 |
ttttttgtagtatgctctttactttctgattgttggtgctgctatttgggcatcttcatgggcaggtgaag |
27806226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 41179905 - 41179692
Alignment:
| Q |
23 |
gagaaggttaagaatgttgcttctgttgggttttgtgagcttttcagatttgctgatgggttagattatgttcttatgataattggaagtttaggagctg |
122 |
Q |
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| T |
41179905 |
gagaaggttaagagtgctcctgctgttgggtttggagaactttttagatttgctgatgggttggattatattttaatgacaattggaaccgttggagcaa |
41179806 |
T |
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| Q |
123 |
ttgttcatggttgttctttgccactgtttcttcggttttttgctgatcttgttaattcttttggttctaatgctaataatttggataagatgactcaaga |
222 |
Q |
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|||||||||||||||| ||||| || |||||| | || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
41179805 |
ttgttcatggttgttccttgcctctttttcttagattctttgctgatcttgttaactcttttggttccaatgctaataatttggataagatgacacaaga |
41179706 |
T |
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| Q |
223 |
agttgctaaggtaa |
236 |
Q |
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||||| ||||||| |
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| T |
41179705 |
agttgtcaaggtaa |
41179692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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