View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1541_high_8 (Length: 419)
Name: NF1541_high_8
Description: NF1541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1541_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 206 - 386
Target Start/End: Complemental strand, 2892823 - 2892643
Alignment:
| Q |
206 |
aagcacaatataatttgctatgggaagaacaccttgttgtgagaagaataatggtctcaaaaaaggaccatggacaactgaggaagatcagaaactcatt |
305 |
Q |
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| T |
2892823 |
aagcacaatataatttgctatgggaagaacaccttgttgtgagaagaataatggtctcaaaaaaggaccatggacaactgaggaagatcagaaactcatt |
2892724 |
T |
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| Q |
306 |
gattacattcagaaacatggttatggcaattggaggacactcccaaagaatgctggtatattatattttcactacttgtat |
386 |
Q |
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| T |
2892723 |
gattacattcagaaacatggttatggcaattggaggacactcccaaagaatgctggtatattatattttcactacttgtat |
2892643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 2892989 - 2892821
Alignment:
| Q |
13 |
caaagggcggcaccgaatccatttgacttccaatcacacacttttcaccatcttcctttctatttataccataaccttgtctcaactacgtcccattacg |
112 |
Q |
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| T |
2892989 |
caaaggacggcaccgaatccatttgacttccaatcacacacttttcaccatcttcctttctatttataccataaccttgtctcaactacgtcccattacg |
2892890 |
T |
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| Q |
113 |
gaccctctaatttgtttctctattttctcctccattactatttgagcaacgtaactaactagctagaag |
181 |
Q |
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| T |
2892889 |
gaccctctaatttgtttctctattttctcctccattactatttgagcaacgtaactaactagctagaag |
2892821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 225 - 363
Target Start/End: Original strand, 36245993 - 36246131
Alignment:
| Q |
225 |
atgggaagaacaccttgttgtgagaagaataatggtctcaaaaaaggaccatggacaactgaggaagatcagaaactcattgattacattcagaaacatg |
324 |
Q |
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| T |
36245993 |
atgggaagagcaccttgttgtgaaaagaataatggcctcaaaagaggaccatggacacaagaggaagaccaaaaacttatagattatattcaaaaacatg |
36246092 |
T |
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| Q |
325 |
gttatggcaattggaggacactcccaaagaatgctggta |
363 |
Q |
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| T |
36246093 |
gttatggcaactggagattactcccaaagaatgctggta |
36246131 |
T |
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