View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1541_low_1 (Length: 670)
Name: NF1541_low_1
Description: NF1541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1541_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 654
Target Start/End: Original strand, 48894121 - 48894766
Alignment:
| Q |
18 |
gaacatgcattgttatatataggggtcggagttcaaaccttaaatcccaacttattcaccttnnnnnnnn-gttgaattccggctatttaacaacnnnnn |
116 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||| |||||||||||||||||| |||| |
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| T |
48894121 |
gaacatgcattgttatatataggggtcggagttcgaacctcaaataccaacttattcaccttaaaaaaaaagttgaattccggctatttgacaa--aaaa |
48894218 |
T |
|
| Q |
117 |
nnncatacacatacacatgcataggtatnnnnnnnnn----------cagataattgctctaaataagttcttcatgttgttcaaccttaccnnnnnnng |
206 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
48894219 |
aaacatacacatacacatgcataggtaaaaaaaagaaaaaaaaaacacagataattgctctaaataagttcttcatgttgttcaaccttaccaaaaaaag |
48894318 |
T |
|
| Q |
207 |
gaccagaggataagnnnnnnngagtaggaagatgtggtcagtagaacaatcaccaaaaacacacaagtgaaggccaataaattctaatacaaattgttat |
306 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48894319 |
gaccagaggataagaaaaaaagagtaggaagatgtggtcattagaacaatcaccaaaaacacacaagtgaaggccaataaattctaatacaaattgttat |
48894418 |
T |
|
| Q |
307 |
cataaaaaattaccggttcaaatatgagaggaaataaataatatctgtaattaagcaaggtaggaagtagcaactaccttggcttgaatggcttctgtat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48894419 |
cataaaaaattaccggttcaaatatgagaggaaataaataatatctgtaattaagcaaggtaggaagtagcaactaccttggcttgaatggcttctgtat |
48894518 |
T |
|
| Q |
407 |
agtcaagaacgacatcgagcaaggagccagaaaagtgaggaatggaagcataatgttgatggtaggtgggagaattaagtgggaatcttgctctctcaat |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48894519 |
agtcaagaacgacatcgagcaaggagccagaaaagtgaggaatggaagcataatgttgatggtaggtgggagaattaagtgggaatcttgctctctcaat |
48894618 |
T |
|
| Q |
507 |
cacactaaatatgattgtatcctcttgtctaattaaagatgctctcactgattctactgtgtattcattctctgaaccctttgcagttgatttgtgtctc |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48894619 |
cacactaaatatgattgtatcctcttgtctaattaaagatgctctcactgattcaactgtgtattcattctctgaaccctttgcagttgatttgtgtctc |
48894718 |
T |
|
| Q |
607 |
tccgtacaacttaacagcataacaaccacagcaataaatcgaagcttc |
654 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48894719 |
tccgtacaacttaacagcataacaaccacagccataaatcgaagcttc |
48894766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 4985783 - 4985819
Alignment:
| Q |
20 |
acatgcattgttatatataggggtcggagttcaaacc |
56 |
Q |
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||||||||||||||||||||||||||| |||| |||| |
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| T |
4985783 |
acatgcattgttatatataggggtcggggttcgaacc |
4985819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 17557054 - 17557090
Alignment:
| Q |
20 |
acatgcattgttatatataggggtcggagttcaaacc |
56 |
Q |
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|||||||||||||||| |||||||||| ||||||||| |
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| T |
17557054 |
acatgcattgttatatgtaggggtcggggttcaaacc |
17557090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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