View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1541_low_12 (Length: 387)

Name: NF1541_low_12
Description: NF1541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1541_low_12
NF1541_low_12
[»] chr8 (6 HSPs)
chr8 (53-369)||(32709643-32709959)
chr8 (9-368)||(32703930-32704293)
chr8 (9-171)||(32627903-32628065)
chr8 (9-367)||(7297866-7298224)
chr8 (59-190)||(7293569-7293700)
chr8 (293-367)||(32627707-32627781)
[»] chr4 (1 HSPs)
chr4 (52-190)||(5811529-5811667)
[»] chr6 (2 HSPs)
chr6 (63-241)||(21943681-21943859)
chr6 (63-210)||(20115800-20115947)
[»] chr3 (1 HSPs)
chr3 (52-357)||(27736681-27736986)
[»] chr5 (1 HSPs)
chr5 (62-123)||(8028972-8029033)


Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 53 - 369
Target Start/End: Complemental strand, 32709959 - 32709643
Alignment:
Q  53 agcttggcaattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttga 152  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32709959 agcttagcaattgcagacttgggttgctcttctgggccaaacactttgttggtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttga 32709860  T
Q  153 atcatgaatctcccgaatacaaggtcttcttgaacgatttgcccggtaacgacttcaataacatctttagatctcttgataacttcaaaaagagactgca 252  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32709859 atcatgaatctcccgaatacaaggtcttcttgaacgatttgccgggtaacgacttcaataacatctttagatctcttgataacttcaaaaagagactgca 32709760  T
Q  253 cggtgaaacagaaactgaaatggatcagtgttatatatctggagttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgtccat 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32709759 cggtgaaacagaaactgaaatggatcagtgttatatatctggagttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgtccat 32709660  T
Q  353 tcctcttacagccttat 369  Q
    |||||||||||||||||    
T  32709659 tcctcttacagccttat 32709643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 9 - 368
Target Start/End: Complemental strand, 32704293 - 32703930
Alignment:
Q  9 gagatgaagccataacaaacatgtacaacaaaacactccccgtaagcttggcaattgcagacttgggttgctcttctgggccaaacactttgtttgtggt 108  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||||||| | | |    
T  32704293 gagaagaagccataacaaacatgtacaataaaacactccccataagcttggcaattgcagatttgggttgctcttatggaccaaacactttgttggcgat 32704194  T
Q  109 atcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatgaatctcccga----atacaaggtcttcttgaacgatttgcccggtaacga 204  Q
     |||||   ||||||||| ||||||||| ||||||||||| | |||||| ||||||| ||    ||| |||||||| ||||||||| | || || |||||    
T  32704193 ctcagatactatcaaggttgtggaaaagatttgtcgagagcttaatcataaatctcctgaatatatataaggtctttttgaacgatctaccagggaacga 32704094  T
Q  205 cttcaataacatctttagatctcttgataacttcaaaaagagactgcacggtgaaacagaaactgaaatggatcagtgttatatatctggagttcctggt 304  Q
    |||||| ||  | ||||| || || || |  |||||| | |  || || | |||||  ||||| |||||||  |  || ||  | | ||| ||||| |||    
T  32704093 cttcaacaatgtatttaggtccctcgacacgttcaaagaaaatctacaggctgaaatggaaaccgaaatggtaccttgctacttctttggggttcccggt 32703994  T
Q  305 tctttctatggcaggatttttcctaatcaaagtttgcattttgtccattcctcttacagcctta 368  Q
    || |||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||    
T  32703993 tccttctatggcaggatttttcctaataaaagtttgcattttgttcattcctcttatagcctta 32703930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 32628065 - 32627903
Alignment:
Q  9 gagatgaagccataacaaacatgtacaacaaaacactccccgtaagcttggcaattgcagacttgggttgctcttctgggccaaacactttgtttgtggt 108  Q
    |||||||||||||||| | |||||||||||| |||||| ||  ||||||| ||||||||||||| ||||||||||||||  ||||||||||||| ||| |    
T  32628065 gagatgaagccataaccagcatgtacaacaacacactctccaaaagcttgacaattgcagacttaggttgctcttctggatcaaacactttgttggtgat 32627966  T
Q  109 atcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatgaatctcccgaata 171  Q
     | |||  ||||||| || |||||||||||||||||| |  | |||||| |||||||||||||    
T  32627965 cttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataaatctcccgaata 32627903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 367
Target Start/End: Complemental strand, 7298224 - 7297866
Alignment:
Q  9 gagatgaagccataacaaacatgtacaacaaaacactccccgtaagcttggcaattgcagacttgggttgctcttctgggccaaacactttgtttgtggt 108  Q
    |||||||||||||||||| | | |||  |||||||||   |  |||| | ||||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  7298224 gagatgaagccataacaagcctctactccaaaacacttttcaaaagccttgcaattgcagatttaggttgttcttctggaccaaacactttgtttgtggt 7298125  T
Q  109 atcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatgaatctcccgaatacaaggtcttcttgaacgatttgcccggtaacgacttc 208  Q
    ||||||  |||||| ||| ||||| |||||||| | | | ||||| |||  ||||||||| |||||| | || || || ||| |  | || || ||||||    
T  7298124 atcagatattatcatggttgtggagaagctttgccaacaattgaaccattcatctcccgagtacaagatattttttaatgatgtttctggaaatgacttc 7298025  T
Q  209 aataacatctttagatctcttgataacttcaaaaagagactgcacggtgaaacagaaactgaaatggatcagtgttatatatctggagttcctggttctt 308  Q
    || ||||| ||||  || ||||| ||||| ||| ||| |||||| | |||||   ||||| |||||  |   || ||  | | ||| |||||||||||||    
T  7298024 aacaacatatttaagtcacttgacaactttaaagagaaactgcaagatgaaatcaaaactaaaatgagttcttgctacttttttggggttcctggttctt 7297925  T
Q  309 tctatggcaggatttttcctaatcaaagtttgcattttgtccattcctcttacagcctt 367  Q
    ||||| | ||  |||||||||||| |||||| |||||  | ||||||||| ||||||||    
T  7297924 tctatagtagagtttttcctaatcgaagtttacatttcattcattcctctcacagcctt 7297866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 190
Target Start/End: Complemental strand, 7293700 - 7293569
Alignment:
Q  59 gcaattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatg 158  Q
    |||||||||||  ||||||| |||| ||| | ||||||||||| |||||| |||||| | |||| ||| ||||| |||||||| | | | |||||  |||    
T  7293700 gcaattgcagatctgggttgttcttgtggacaaaacactttgtctgtggtgtcagaaatcatcatggttgtggagaagctttgccaacaattgaaatatg 7293601  T
Q  159 aatctcccgaatacaaggtcttcttgaacgat 190  Q
     |||||||||||||||| |||| || ||||||    
T  7293600 catctcccgaatacaagatcttttttaacgat 7293569  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 367
Target Start/End: Complemental strand, 32627781 - 32627707
Alignment:
Q  293 ggagttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgtccattcctcttacagcctt 367  Q
    |||||||||||||| ||  |||| || |||||||||  |||||||||||||||||| ||||||||||| ||||||    
T  32627781 ggagttcctggttcctttcatggtagaatttttcctcttcaaagtttgcattttgttcattcctcttatagcctt 32627707  T

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Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 52 - 190
Target Start/End: Complemental strand, 5811667 - 5811529
Alignment:
Q  52 aagcttggcaattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttg 151  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||| || ||| | || ||| |||||||||| || |||||||||||||||||  |     
T  5811667 aagcttggcaattgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaactt 5811568  T
Q  152 aatcatgaatctcccgaatacaaggtcttcttgaacgat 190  Q
    |||||| ||||||||||||| || ||||| |||||||||    
T  5811567 aatcataaatctcccgaatataaagtctttttgaacgat 5811529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 63 - 241
Target Start/End: Complemental strand, 21943859 - 21943681
Alignment:
Q  63 ttgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatgaatc 162  Q
    |||||||||||||||| |||||||| | ||| |||||||| ||| | || ||  |||| || || |||||||||||||||| ||||||||||||||||||    
T  21943859 ttgcagacttgggttgttcttctggactaaatactttgttggtgatctcggagattataaatgttgtggaaaagctttgtcaagagttgaatcatgaatc 21943760  T
Q  163 tcccgaatacaaggtcttcttgaacgatttgcccggtaacgacttcaataacatctttagatctcttgataacttcaaa 241  Q
    ||||||||| ||||| || ||||||||| | ||||| ||||| ||||| ||| | ||||| || ||||| | |||||||    
T  21943759 tcccgaatataaggtatttttgaacgatctacccggaaacgatttcaacaacgtatttaggtcccttgagaccttcaaa 21943681  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 20115800 - 20115947
Alignment:
Q  63 ttgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatgaatc 162  Q
    |||||||||| ||||||||||| || |||||||| ||||| ||| | |||||| |||||||||| |||||||||||||||  ||| ||||||||||||||    
T  20115800 ttgcagacttaggttgctcttcaggaccaaacaccttgttggtgatctcagaaattatcaaggttgtggaaaagctttgtatagaattgaatcatgaatc 20115899  T
Q  163 tcccgaatacaaggtcttcttgaacgatttgcccggtaacgacttcaa 210  Q
    ||| |||||  | ||||  ||||||||| |  |||| |||||||||||    
T  20115900 tcctgaatatgatgtctctttgaacgatctatccggaaacgacttcaa 20115947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 52 - 357
Target Start/End: Complemental strand, 27736986 - 27736681
Alignment:
Q  52 aagcttggcaattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttg 151  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| |||||||| ||||||| |  |||||||| ||||||| || |       
T  27736986 aagcttggcaattgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaactttgtcaagtgcat 27736887  T
Q  152 aatcatgaatctcccgaatacaaggtcttcttgaacgatttgcccggtaacgacttcaataacatctttagatctcttgataacttcaaaaagagactgc 251  Q
     ||||| ||||||| ||||| || || || ||||| ||| | || || || |||||||| ||| | || |  || ||||| | ||||||| ||| ||| |    
T  27736886 catcataaatctcctgaatataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagtcccttgacaccttcaaagagaaactac 27736787  T
Q  252 acggtgaaacagaaactgaaatggatcagtgttatatatctggagttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgtcca 351  Q
      | |||||  |||||| |||| |  | ||| ||  | | ||||||||||||||| || |||||||| ||||||||  || | |||||||||||||| ||    
T  27736786 gtgatgaaatggaaactaaaataggcccgtgctacttctatggagttcctggttcattttatggcagaatttttccagataatagtttgcattttgttca 27736687  T
Q  352 ttcctc 357  Q
    ||||||    
T  27736686 ttcctc 27736681  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 8028972 - 8029033
Alignment:
Q  62 attgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaa 123  Q
    |||||||| |||||||| ||||||||||||||||||||||| ||| |||| ||| |||||||    
T  8028972 attgcagatttgggttgttcttctgggccaaacactttgttggtgatatctgaagttatcaa 8029033  T

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