View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1541_low_15 (Length: 344)

Name: NF1541_low_15
Description: NF1541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1541_low_15
NF1541_low_15
[»] chr1 (2 HSPs)
chr1 (13-332)||(45389312-45389631)
chr1 (13-327)||(45374159-45374473)


Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 45389631 - 45389312
Alignment:
Q  13 aatatccatttgagctctatgcttttaattagactattatgtgtgtatctctgtatttagaatagcatgattgtaaaacgcaacatatgtcagctctgaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45389631 aatatccatttgagctctatgcttttaattagactattatgtgtgtatctctgtatttagaatagcatgattgtaaaacgcaacatatgtcagctctgaa 45389532  T
Q  113 actaatatttacaaatgatatcattggactctatgaaagtgatatcaattacaaatgataccacgtagcaattaatattgtaataagaaatcctaatcga 212  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  45389531 actaatatttacaaataatatcattggactctatgaaagtgatatcaattacaaatgataccacgtagcaattaatattgtaataagaaatcctaatcaa 45389432  T
Q  213 ggcttccttacatcatttgtgttatttcatgattttactgattatctttcttctggcatacaaatcttcacaaaggccgattacgagtttcataaaccta 312  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45389431 ggcttccttatatcatttgtgttatttcatgattttactgattatctttcttctggcatacaaatcttcacaaaggccgattccgagtttcataaaccta 45389332  T
Q  313 cttcttcagttgttgaaagt 332  Q
    ||||||||||||||||||||    
T  45389331 cttcttcagttgttgaaagt 45389312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 327
Target Start/End: Complemental strand, 45374473 - 45374159
Alignment:
Q  13 aatatccatttgagctctatgcttttaattagactattatgtgtgtatctctgtatttagaatagcatgattgtaaaacgcaacatatgtcagctctgaa 112  Q
    ||||||||||||||| |||||||||| ||||||||||||||||  || |||| |||||||||||| ||||||||||||| ||||||||||||||||||||    
T  45374473 aatatccatttgagcactatgctttttattagactattatgtgcatagctctatatttagaatagaatgattgtaaaacacaacatatgtcagctctgaa 45374374  T
Q  113 actaatatttacaaatgatatcattggactctatgaaagtgatatcaattacaaatgataccacgtagcaattaatattgtaataagaaatcctaatcga 212  Q
     |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||   |||| ||||||||||||||||||||||||| ||    
T  45374373 gctaatatttacaaatgatatcattcgactctatgaaagtgatatcaattacaaatgatgccactcggcaactaatattgtaataagaaatcctaataga 45374274  T
Q  213 ggcttccttacatcatttgtgttatttcatgattttactgattatctttcttctggcatacaaatcttcacaaaggccgattacgagtttcataaaccta 312  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||    
T  45374273 ggcttccttatatcatttgtgttatttcatgattttaccgattatctttcttctggcatacaaatcttcacaaaggccaattccaagtttcataaaccta 45374174  T
Q  313 cttcttcagttgttg 327  Q
    |||||||||||||||    
T  45374173 cttcttcagttgttg 45374159  T

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