View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1541_low_2 (Length: 565)

Name: NF1541_low_2
Description: NF1541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1541_low_2
NF1541_low_2
[»] chr4 (11 HSPs)
chr4 (296-546)||(9570085-9570335)
chr4 (14-210)||(9569800-9569996)
chr4 (438-542)||(9581243-9581347)
chr4 (438-542)||(9586938-9587042)
chr4 (24-119)||(9605997-9606092)
chr4 (47-148)||(9593306-9593407)
chr4 (72-151)||(9581509-9581588)
chr4 (72-151)||(9587204-9587283)
chr4 (334-415)||(37895974-37896055)
chr4 (338-412)||(9581371-9581444)
chr4 (338-412)||(9587066-9587139)
[»] chr7 (1 HSPs)
chr7 (326-412)||(42446739-42446825)
[»] chr6 (2 HSPs)
chr6 (326-399)||(29145698-29145771)
chr6 (329-400)||(32740338-32740409)
[»] scaffold0054 (1 HSPs)
scaffold0054 (324-387)||(45142-45205)
[»] scaffold0613 (1 HSPs)
scaffold0613 (339-408)||(605-674)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 296 - 546
Target Start/End: Original strand, 9570085 - 9570335
Alignment:
Q  296 cgtcttagtcgagagacccttttggttgtattgctttgtcaattttattttgaatgtttaatctgtttccatttgcaaacttatctgatttcaatatcaa 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9570085 cgtcttagtcgagagacccttttggttgtattgctttgtcaattttattttgaatgtttaatctgtttccatttgcaaacttatctgatttcaatatcaa 9570184  T
Q  396 tgaaaatattgatcttttgactttagtgaatgacctccagcaatattcatgcaactatgtttagttttctgctttattttttcttttgcatcccaaacca 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9570185 tgaaaatattgatcttttgactttagtgaatgacctccagcaatattcatgcaactatgtttagttttctgctttattttttcttttgtatcccaaacca 9570284  T
Q  496 aaataataaacctgccctgttcaagtttagtggcttagttcaaatcagtta 546  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9570285 aaataataaacctgccctgttcaagtttagtggcttagttcgaatcagtta 9570335  T

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Target: chr4; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 9569800 - 9569996
Alignment:
Q  14 ttctggtctgctgttgctgtttttctggtacgtggttactgtttggcagtgggggttttggaagtttcttgggtcgatcccaccatttttctgtgcagcc 113  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| ||||||    
T  9569800 ttctggtctgctgttgctgtctttctggtatgtggttactgtttggcagtgggggttctggaagtttcttcggtcgatcccaccgtttttctgggcagcc 9569899  T
Q  114 tccaggcttgttttttgcggcttccttgcggcctagcaaagttcactgctgttgtgttttcttctgtttgattggtggatacagttagagtatttgc 210  Q
    |||||||||||||||||||||||||||| ||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9569900 tccaggcttgttttttgcggcttccttgtggcctggcaaagtttaccgctgtcgtgttttcttctgtttgattggtggatacagttagagtatttgc 9569996  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 438 - 542
Target Start/End: Complemental strand, 9581347 - 9581243
Alignment:
Q  438 atattcatgcaactatgtttagttttctgctttattttttcttttgcatcccaaaccaaaataataaacctgccctgttcaagtttagtggcttagttca 537  Q
    ||||||||| ||| |||||||||||  ||||||||||||||||||| |||||||||| ||||||||||| || | |||||||| || |||||||||||||    
T  9581347 atattcatgaaaccatgtttagtttaatgctttattttttcttttgtatcccaaacctaaataataaacttggcttgttcaagcttggtggcttagttca 9581248  T
Q  538 aatca 542  Q
    |||||    
T  9581247 aatca 9581243  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 438 - 542
Target Start/End: Complemental strand, 9587042 - 9586938
Alignment:
Q  438 atattcatgcaactatgtttagttttctgctttattttttcttttgcatcccaaaccaaaataataaacctgccctgttcaagtttagtggcttagttca 537  Q
    ||||||||| ||| |||||||||||  ||||||||||||||||||| |||||||||| ||||||||||| || | |||||||| || |||||||||||||    
T  9587042 atattcatgaaaccatgtttagtttaatgctttattttttcttttgtatcccaaacctaaataataaacttggcttgttcaagcttggtggcttagttca 9586943  T
Q  538 aatca 542  Q
    |||||    
T  9586942 aatca 9586938  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 9606092 - 9605997
Alignment:
Q  24 ctgttgctgtttttctggtacgtggttactgtttggcagtgggggttttggaagtttcttgggtcgatcccaccatttttctgtgcagcctccagg 119  Q
    ||||||||| |||||||||  |||||| ||||||||| ||||||||| ||||||||||||||||| |||||||  |||||||||||||||| ||||    
T  9606092 ctgttgctgcttttctggtctgtggttgctgtttggcggtgggggttctggaagtttcttgggtcaatcccactgtttttctgtgcagccttcagg 9605997  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 9593407 - 9593306
Alignment:
Q  47 ggttactgtttggcagtgggggttttggaagtttcttgggtcgatcccaccatttttctgtgcagcctccaggcttgttttttgcggcttccttgcggcc 146  Q
    |||| ||||||||||||||||||| ||||||| ||||| ||| |||||||| ||||| |||||||| | |||||||||||| ||||||||||| | ||||    
T  9593407 ggttgctgtttggcagtgggggttctggaagtgtcttgagtctatcccaccgtttttatgtgcagctttcaggcttgttttgtgcggcttcctcgtggcc 9593308  T
Q  147 ta 148  Q
    ||    
T  9593307 ta 9593306  T

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Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 9581588 - 9581509
Alignment:
Q  72 tggaagtttcttgggtcgatcccaccatttttctgtgcagcctccaggcttgttttttgcggcttccttgcggcctagca 151  Q
    |||||||||| ||||||||||||||| |||||||||||||| | |||||||||| | || ||||||||||||||||||||    
T  9581588 tggaagtttcctgggtcgatcccaccgtttttctgtgcagcgttcaggcttgttgtgtgtggcttccttgcggcctagca 9581509  T

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Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 9587283 - 9587204
Alignment:
Q  72 tggaagtttcttgggtcgatcccaccatttttctgtgcagcctccaggcttgttttttgcggcttccttgcggcctagca 151  Q
    |||||||||| ||||||||||||||| |||||||||||||| | |||||||||| | || ||||||||||||||||||||    
T  9587283 tggaagtttcctgggtcgatcccaccgtttttctgtgcagcgttcaggcttgttgtgtgtggcttccttgcggcctagca 9587204  T

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Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 37895974 - 37896055
Alignment:
Q  334 tcaattttattttgaatgtttaatctgtttccatttgcaaacttatctgatttcaatatcaatgaaaatattgatcttttga 415  Q
    |||||||||||||||||||||| ||| ||||  ||||| ||||||||||||||| ||||||||||||| | ||||| |||||    
T  37895974 tcaattttattttgaatgtttagtctctttctttttgcgaacttatctgatttccatatcaatgaaaagagtgatcatttga 37896055  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 9581444 - 9581371
Alignment:
Q  338 ttttattttgaatgtttaatctgtttccatttgcaaacttatctgatttcaatatcaatgaaaatattgatcttt 412  Q
    |||||||||||||||||| ||| |||| |||||| ||||| | ||||||| |||||| ||||| || ||||||||    
T  9581444 ttttattttgaatgtttagtctctttctatttgcgaactt-tttgatttccatatcattgaaagtaatgatcttt 9581371  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 9587139 - 9587066
Alignment:
Q  338 ttttattttgaatgtttaatctgtttccatttgcaaacttatctgatttcaatatcaatgaaaatattgatcttt 412  Q
    |||||||||||||||||| ||| |||| |||||| ||||| | ||||||| |||||| ||||| || ||||||||    
T  9587139 ttttattttgaatgtttagtctctttctatttgcgaactt-tttgatttccatatcattgaaagtaatgatcttt 9587066  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 326 - 412
Target Start/End: Original strand, 42446739 - 42446825
Alignment:
Q  326 ttgctttgtcaattttattttgaatgtttaatctgtttccatttgcaaacttatctgatttcaatatcaatgaaaatattgatcttt 412  Q
    ||||||| | ||||||| || ||||||||| ||| ||| |||||||||||  |||||||||| ||||||||||||| | ||||||||    
T  42446739 ttgctttatgaattttacttcgaatgtttagtctcttttcatttgcaaacgaatctgatttctatatcaatgaaaagaatgatcttt 42446825  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 399
Target Start/End: Original strand, 29145698 - 29145771
Alignment:
Q  326 ttgctttgtcaattttattttgaatgtttaatctgtttccatttgcaaacttatctgatttcaatatcaatgaa 399  Q
    ||||||| |||||||||||||||||||||  ||| ||||||||| |||||| || ||||||| |||||| ||||    
T  29145698 ttgctttatcaattttattttgaatgttttttctctttccatttacaaactgatttgatttccatatcattgaa 29145771  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 32740409 - 32740338
Alignment:
Q  329 ctttgtcaattttattttgaatgtttaatctgtttccatttgcaaacttatctgatttcaatatcaatgaaa 400  Q
    |||| |||||||||||||||||||||| | | ||| | |||| ||||| |||||||| | ||||||||||||    
T  32740409 ctttatcaattttattttgaatgtttagtttttttacttttggaaactaatctgattcccatatcaatgaaa 32740338  T

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Target: scaffold0054 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 387
Target Start/End: Complemental strand, 45205 - 45142
Alignment:
Q  324 tattgctttgtcaattttattttgaatgtttaatctgtttccatttgcaaacttatctgatttc 387  Q
    ||||||||| |||| ||| ||||||||||||| ||| ||||||||||| |||| || |||||||    
T  45205 tattgctttatcaactttcttttgaatgtttagtctctttccatttgctaactgatatgatttc 45142  T

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Target: scaffold0613 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 408
Target Start/End: Original strand, 605 - 674
Alignment:
Q  339 tttattttgaatgtttaatctgtttccatttgcaaacttatctgatttcaatatcaatgaaaatattgat 408  Q
    ||||||||||||||||| ||| ||| ||||| |||||| |||| ||||  |||||| |||||||| ||||    
T  605 tttattttgaatgtttagtctcttttcattttcaaactaatcttattttcatatcattgaaaataatgat 674  T

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