View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1541_low_21 (Length: 285)
Name: NF1541_low_21
Description: NF1541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1541_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 40290402 - 40290632
Alignment:
| Q |
12 |
ataggggtagttggtcttctcactcgtggccttcctcttcgtatagttatgattggaacactaactggtgctcagtggggtctctatgattcatttaaag |
111 |
Q |
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| T |
40290402 |
ataggggtagttggtcttttcactcgtggccttcctcttcgtatagttatgattggaacactaactggtgctcagtggggtctctatgattcatttaaag |
40290501 |
T |
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| Q |
112 |
tatttgtagggctgtaagtatttgctcttatctgatatatcatcctacttcaattactttcatcttgcgtagcacacctacaccttagattaaagacatg |
211 |
Q |
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| T |
40290502 |
tatttgtagggctgtaagcatctgctcttatctgatatatcatcctacttcaattactttcatcttacg-agcacacctacaccttagattaaagacatg |
40290600 |
T |
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| Q |
212 |
tgagacactaacaacgatacatacagacacat |
243 |
Q |
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| T |
40290601 |
tgagacactaacaacgatacatacagacacat |
40290632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 10601559 - 10601644
Alignment:
| Q |
45 |
cctcttcgtatagttatgattggaacactaactggtgctcagtggggtctctatgattcatttaaagtatttgtagggctgtaagt |
130 |
Q |
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| T |
10601559 |
cctcttcgtattcttatggttggaactctaactggagctcaatggggaatttatgatgcattcaaagtttctgtggggctgtaagt |
10601644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 25422572 - 25422604
Alignment:
| Q |
247 |
ttcacaagaacaacgcactctacaagtgcaatt |
279 |
Q |
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| T |
25422572 |
ttcacatgaacaacgcactctacaagtgcaatt |
25422604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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