View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1541_low_23 (Length: 269)
Name: NF1541_low_23
Description: NF1541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1541_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 110 - 251
Target Start/End: Complemental strand, 32867618 - 32867477
Alignment:
| Q |
110 |
caaattctagctcaattggtgaggataagtcataacttaaatcgatatgtgatctcaacgaccccctcacccccagcacgagacatctagtgtagacaaa |
209 |
Q |
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| T |
32867618 |
caaattctagctcaattggtgaggataagtcataacttaaatcgatatgtgatctcaacgaccccctcacccccagcacgagacatctagtgtagacaaa |
32867519 |
T |
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| Q |
210 |
cgtgagtggccgaataacataaaatatatctagaataattcg |
251 |
Q |
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| T |
32867518 |
cgtgagtggccgaataacataaaatatatctagaataattcg |
32867477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 246
Target Start/End: Original strand, 32901795 - 32901995
Alignment:
| Q |
49 |
aggatgacaagtataatgtatattttaagaattagaatttggcttaggccataatcagctccaaattctagctcaattggtgaggat-aagtcataactt |
147 |
Q |
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| T |
32901795 |
aggatgagaagtagaatatatgcttttagaattagaatttggcttaggcctaaatcaattcaaaaatctagctcaagtggtgaggataaagtcatatttt |
32901894 |
T |
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| Q |
148 |
aaatcgatatgtgatctcaacgaccccctcacccccagca--cgagacatctagtgtagacaaacgtgagtggccgaataacataaaatatatctagaat |
245 |
Q |
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| T |
32901895 |
tagttggtacgagatctcaacgactacctcacccccagcatgtgacacatgaagtgtagacaaatgcgggtggcctaataacatataacatatctagaat |
32901994 |
T |
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| Q |
246 |
a |
246 |
Q |
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| T |
32901995 |
a |
32901995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 32867654 - 32867616
Alignment:
| Q |
11 |
cacagacggtgaaagcccaaaaaatcataaacagaacaa |
49 |
Q |
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| T |
32867654 |
cacaaacggtgaaagcccaaaaaatcataaacagaacaa |
32867616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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