View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1541_low_25 (Length: 236)
Name: NF1541_low_25
Description: NF1541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1541_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 45568528 - 45568308
Alignment:
| Q |
1 |
ctacaatgaagttctgaaaatgtttgttgtgttgattgttccgtaattccatatggttattagtgttacatctagagttttaccgttttagaagtctttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45568528 |
ctacaatgaagttctgaaaatgtttgttgtgttgattgttccgtaattccatatggttataagtgttacatctagagttttaccgttttagaagtctttt |
45568429 |
T |
|
| Q |
101 |
gtacatcatgggctgggagttcattatgttgtcatttgtagcac-aatacagtttttaacatattgttatcatttgttttagtatgagcagttaggaatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45568428 |
gtacatcatgggctgggagttcattatgttgtcatttgtagcacaaatacagtttttaacatattgttatcatttgttttagtatgagcaggtaggaatt |
45568329 |
T |
|
| Q |
200 |
gctaattacactggctacaat |
220 |
Q |
| |
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|||||||||||||| |||||| |
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| T |
45568328 |
gctaattacactggttacaat |
45568308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 45093846 - 45093629
Alignment:
| Q |
1 |
ctacaatgaagttctgaaaatgtttgttgtgttgattgttccgtaattccatatggttattagtgttacatctagagttttaccgttttagaagtctttt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| |||||||||| |||||| ||||||||||||||||| |
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| T |
45093846 |
ctacaatgaagttctgaaaatgtttgttgtgttgattgttctgtacttccatacggttattagtattacatctagggttttatcgttttagaagtctttt |
45093747 |
T |
|
| Q |
101 |
gtacatcatgggctgggagttcattatgttgtcatttgtagcacaa--tacagtttttaacatattgttatcatttgttttagtatgagcagttaggaat |
198 |
Q |
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| T |
45093746 |
gtaaatcatgtgttgggagttcattattttgtcatttgtagcaaaatgtattgtttttaacgtattgttaccatttgttttagtatgagcaggttggaat |
45093647 |
T |
|
| Q |
199 |
tgctaattacactggcta |
216 |
Q |
| |
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|||||||||||||||||| |
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| T |
45093646 |
tgctaattacactggcta |
45093629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 44666805 - 44666614
Alignment:
| Q |
1 |
ctacaatgaagttctgaaaatgtttgttgtgttgattgttccgtaattccatatggttattagtgttacatctagagttttaccgttttagaagtctttt |
100 |
Q |
| |
|
|||| ||||| |||||||||| ||||||||||||| ||| ||| ||||| |||||||||| ||| ||| || |||||||||| |||||||| | | |
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| T |
44666805 |
ctacgatgaacttctgaaaattattgttgtgttgatagttttgtagttccacgtggttattagaattaaatcatgaattttaccgttctagaagtcatct |
44666706 |
T |
|
| Q |
101 |
gtacatcatgggctgggagttcattatgttgtcatttgtagcaca--atacagtttttaacatattgttatcatttgttttagtatgagcag |
190 |
Q |
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| T |
44666705 |
gcaaatcatgtgtcgggagttcattagtttgtcaagtgtagcacaatatatagtttttaacgtattattatcatccgttttagtttgagcag |
44666614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 44686129 - 44685938
Alignment:
| Q |
1 |
ctacaatgaagttctgaaaatgtttgttgtgttgattgttccgtaattccatatggttattagtgttacatctagagttttaccgttttagaagtctttt |
100 |
Q |
| |
|
|||| ||||| |||||||||| ||||||||||||| ||| ||| ||||| |||||||||| ||| ||| || |||||||||| |||||||| | | |
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| T |
44686129 |
ctacgatgaacttctgaaaattattgttgtgttgatagttttgtagttccacgtggttattagaattaaatcatgaattttaccgttctagaagtcatct |
44686030 |
T |
|
| Q |
101 |
gtacatcatgggctgggagttcattatgttgtcatttgtagcaca--atacagtttttaacatattgttatcatttgttttagtatgagcag |
190 |
Q |
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| | |||||| | |||||||||||| |||||| ||||||||| ||| |||||||||| |||| ||||||| |||||||| ||||||| |
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| T |
44686029 |
gcaaatcatgtgtcgggagttcattagtttgtcaagtgtagcacaatatatagtttttaacgtattattatcatccgttttagtttgagcag |
44685938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 216
Target Start/End: Original strand, 45177048 - 45177214
Alignment:
| Q |
51 |
atatggttattagtgttacatctagagttttaccgttttagaagtcttttgtacatcatgggctgggagttcattatgttgtcatttgtagcacaatac- |
149 |
Q |
| |
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||||| |||||||| ||||||| ||| |||||||||||||||||| | ||| |||||| | || ||||||||||| ||||||| |||| |||||||| |
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| T |
45177048 |
atatgattattagtattacatccagaattttaccgttttagaagtaatctgtgaatcatgtgttgagagttcattattttgtcatgtgtaacacaataca |
45177147 |
T |
|
| Q |
150 |
-agtttttaacatattgttatcatttgttttagtatgagcagttaggaattgctaattacactggcta |
216 |
Q |
| |
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||| |||||| |||| | ||| |||| |||| | ||||||| | |||||||||||| ||||| |||| |
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| T |
45177148 |
tagtctttaacgtattataatcctttg-tttaatttgagcaggttggaattgctaataacacttgcta |
45177214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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