View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1541_low_5 (Length: 456)
Name: NF1541_low_5
Description: NF1541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1541_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 129 - 417
Target Start/End: Original strand, 47122198 - 47122507
Alignment:
| Q |
129 |
aggaaagagctgcaacaaagagaggtttgtcgactttttcttttactaacaataaccttttctctatgcattcatcattatatcact-tacttatag--g |
225 |
Q |
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| T |
47122198 |
aggaaagagctgcaacaaagagaggtttgtcgactttttcttttactaacaattaccttttctctatgcattcatcattatatcactatacttatagagg |
47122297 |
T |
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| Q |
226 |
accgtattaggtttatattcctagtagttgtgtgcctattactcgtgtatcattttatcaaagatatcattatagtcattaccatgttggtttgatctct |
325 |
Q |
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| T |
47122298 |
accgtattaggtttatattcctagtagttgtgtgcctattacttgtgtatcattttatcaaagatatcattatagtcattaccatgttggtttgatctct |
47122397 |
T |
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| Q |
326 |
acttttacataatttgg-----------------ttaaattagttttgggtt-ctacaaatatagtgaattttgtttttagtctttgtatccactttgta |
407 |
Q |
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| T |
47122398 |
acttttacataatttggtacttttttaaataagattaaattagttttgggttcctacaaatatagtgaattttgtttttaatctttgtatccattttgta |
47122497 |
T |
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| Q |
408 |
gtccatacaa |
417 |
Q |
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|||||||||| |
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| T |
47122498 |
gtccatacaa |
47122507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 47122088 - 47122142
Alignment:
| Q |
19 |
atgacacaaaatccaccatgaataaaatcaaaccacaagtgatcatgtaagcccg |
73 |
Q |
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| T |
47122088 |
atgacacaaaatcgaccatgaataaaatcaaaccacaagtgatcatgtaagcccg |
47122142 |
T |
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