View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1541_low_9 (Length: 403)
Name: NF1541_low_9
Description: NF1541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1541_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 44109569 - 44109954
Alignment:
| Q |
1 |
ttttaaatattgtgtataatataatgcgtattgatgcgcaatgttgcctttagttgtgtttcccatgcaaatctatttctgttacannnnnnnnagtatc |
100 |
Q |
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| T |
44109569 |
ttttaaatattgtgtataatataatgtgtattgatgcgcaatgttgcctttagttgtgtttcccatgcaaatctatttctgtttcattttttt-aggatc |
44109667 |
T |
|
| Q |
101 |
ctttctatgcaattgatcatctccatctccttcccgagttccacaatttgacacatctttgtctgcatcggaggattaaacctttcactagaaaaacaat |
200 |
Q |
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| T |
44109668 |
ctctctatgcaattgatcatctccatctccttcccgagttccacaatttgacacatctttgtctgcatcggaggattaaacctttcactataaaaacagt |
44109767 |
T |
|
| Q |
201 |
actggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtacgccttatatcctgcttaatctgcctcatttaaatgttaaaacag |
300 |
Q |
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| T |
44109768 |
actggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtacgccttatatcctgcttaatctgcctcatttaaatgttaaaacag |
44109867 |
T |
|
| Q |
301 |
tgatattacttctatccgctaacttgttaattgattcttatttagggaattggcaaaatcgtcgataagagagactatgcattaatt |
387 |
Q |
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| T |
44109868 |
tgatattacttctatccgctaacttgttaattgattcttatttagggaattggcaaaatcgtcgataagagagactatgcattaatt |
44109954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 40276476 - 40276868
Alignment:
| Q |
1 |
ttttaaatattgtgtataatataat-----gcgtattgatgcgcaatgttgcctttagttgtgtttcccatgcaaatctatttctgttacannnnnnnna |
95 |
Q |
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| T |
40276476 |
ttttaaatattgtgtataatataataagatgcgtattgacgcacaatgttgcctttggctgtgtttcccatgcaagtctattgttgtttc-cttttacta |
40276574 |
T |
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| Q |
96 |
gtatcctttctatgcaattgatcatctccatctccttcccgagttccacaatttgacacatctttgtctgcatcggaggattaaacctttcactagaaaa |
195 |
Q |
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| T |
40276575 |
ggaacctctctatgtaattgatcatctccatccccttcctgagctccacaatttgacacatctttgtctggatttggagattatc---ttcagtagaaaa |
40276671 |
T |
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| Q |
196 |
acaatactggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtacgcctta----tatcctgcttaatctgcctcatttaaatg |
291 |
Q |
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||| || |||||||||||||||||||||||||| ||||| |||||||| |||||| ||||| ||||| |||||||||||||||| ||||||| | || |
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| T |
40276672 |
acattaatggaattcctcttaaggtgtcctaaattggaagctcttgtttttcctcaggtacaccttaattatatcctgcttaatctgtctcatttcattg |
40276771 |
T |
|
| Q |
292 |
ttaaaacagtgatatt-acttctatccgctaacttgttaattgattcttatttagggaattggcaaaatcgtcgataagagagactatgcattaatt |
387 |
Q |
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| T |
40276772 |
ttaaaacaatgatatttacttctatccactaacttgttaattgattccaatttagggaattggcaaactcgtggataagagaaactatgcataaatt |
40276868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 104 - 346
Target Start/End: Complemental strand, 40450710 - 40450469
Alignment:
| Q |
104 |
tctatgcaattgatcatctccatctccttcccgagttccacaatttgacacatctttgtctg-catcggaggattaaacctttcactagaaaaacaatac |
202 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | |||| ||| | |||| |||||||||| || |
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| T |
40450710 |
tctatgtaattgatcatctccatctccttcctgagttccacaatttgacacatctttgtctgactttggag-attgac---ttcagtagaaaaacattaa |
40450615 |
T |
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| Q |
203 |
tggaattcctcttaaggtgtcctaaactggaaactcttgttgttcctctggtacgccttatatcctgct--taatctgcctcatttaaatgttaaaacag |
300 |
Q |
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||||||| ||| |||||||||||||||||||| | |||||| | |||||||||| ||||||||||| || |||||| || ||||| | |||||| || |
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| T |
40450614 |
tggaatttctcctaaggtgtcctaaactggaagcacttgttttacctctggtacaccttatatccttcttataatctcccccatttctaggttaaatcaa |
40450515 |
T |
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| Q |
301 |
tgatattacttctatccgctaacttgttaattgattcttatttagg |
346 |
Q |
| |
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|||||||| ||| |||| | ||||||||||||||||||||||||| |
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| T |
40450514 |
tgatattatttccatccattgacttgttaattgattcttatttagg |
40450469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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