View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15420_high_12 (Length: 243)
Name: NF15420_high_12
Description: NF15420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15420_high_12 |
 | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0122 (1 HSPs) |
| | |
|
| [»] scaffold0583 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 14186003 - 14185797
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgggccatttcgattgagtatagaga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14186003 |
caaaggcgaacgactcgaaccctgatattttagttttctttggaa-gggatatatcagagatcaagtcaatctttgggccatttcgattgagtatagaga |
14185905 |
T |
|
| Q |
117 |
tacgaaaaggacgcaaagagaaataaatgaaatagaaagaaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataatagattttag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14185904 |
tacgaaaaggacgcaaagagaaataaatg-aatagaaagaaaatgagttgcggtgtgaagaaagtgttggtcaataggtctaatttataatacattttag |
14185806 |
T |
|
| Q |
217 |
aggacaatt |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
14185805 |
aggacaatt |
14185797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 14188681 - 14188562
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttg-ggccatttcgattgagtatagag |
115 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||| |||||||| || |||||||||| | | |||| |
|
|
| T |
14188681 |
caaaggcgaacgactcgaacgatgatagtccggttttctttggaaggggatatatcagagatcaagtcaatctttgaggtcatttcgatttaatgaagag |
14188582 |
T |
|
| Q |
116 |
atacgaaaaggacgcaaaga |
135 |
Q |
| |
|
| || ||||| ||||||||| |
|
|
| T |
14188581 |
acacaaaaagtacgcaaaga |
14188562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 39437147 - 39436944
Alignment:
| Q |
22 |
gcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgggccatttcgattgagtatagagatacga |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||| ||| ||||| |||||||||||||||| ||||| |||| |
|
|
| T |
39437147 |
gcgaacgactcgaaccctgatattctagttttttttggaaggggatatatcagagctcaagtcaatttttggaccatttcgattgagtagagagaaacga |
39437048 |
T |
|
| Q |
122 |
aaaggacgcaaagagaaataaatgaaatagaaagaaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataatagattttagaggac |
221 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
39437047 |
aaaggatgcaaagagaaataaatgaaatagaaagaaaatgagttgtggtgtgaagaaagtgttggtcaattggtctaattgataatagattttaaaggac |
39436948 |
T |
|
| Q |
222 |
aatt |
225 |
Q |
| |
|
|||| |
|
|
| T |
39436947 |
aatt |
39436944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 21416157 - 21416375
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| ||||||| ||||||||| |||||||| | | |||| |
|
|
| T |
21416157 |
caaaggcgaacgactcgaaccctgatattccaattttctttggaaggggatatatcagaaatcaagtcaatctttggtgccatttcagcttaaccgagag |
21416256 |
T |
|
| Q |
116 |
atacgaaaaggacgcaaagagaaataaatgaaatagaaag---------aaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataa |
206 |
Q |
| |
|
||||||||| ||||||||| ||| ||| ||| ||||| ||| |||||| |||||||| |||||||||| |||||| || | ||||||| |
|
|
| T |
21416257 |
atacgaaaattacgcaaagaaaaagaaaagaatatgaaagacaactgcaaaacagagttgtggtgtgaagaaagtgttggccaatagatccactttataa |
21416356 |
T |
|
| Q |
207 |
tagattttagaggacaatt |
225 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
21416357 |
tagattttagaggacaatt |
21416375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 2878107 - 2877889
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||| | |||||||||||| ||||||||||||| ||||||| ||||||||| |||||||| | | |||| |
|
|
| T |
2878107 |
caaaagcgaacgactcgaaccctgatatttcaattttctttggaaggggatatatcagaaatcaagtcaatctttggtgccatttcagcttaaccgagag |
2878008 |
T |
|
| Q |
116 |
atacgaaaaggacgcaaagagaaataaatgaaatagaaag---------aaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataa |
206 |
Q |
| |
|
||||||||| ||||||||| ||| ||| ||| ||||| ||| |||||| |||||||| |||||||||| |||||| |||| ||||||| |
|
|
| T |
2878007 |
atacgaaaattacgcaaagaaaaagaaaggaatatgaaagacaactgcaaaacagagttgtggtgtgaagaaagtgttggccaatagatctactttataa |
2877908 |
T |
|
| Q |
207 |
tagattttagaggacaatt |
225 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2877907 |
tagattttagaggacaatt |
2877889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 24257072 - 24256854
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag |
115 |
Q |
| |
|
|||||||||||||||| |||||| |||||| | |||||||||||| ||||||||||||| ||||||| ||||||||| | |||||| | | |||| |
|
|
| T |
24257072 |
caaaggcgaacgactcaaaccctaatattccaattttctttggaaggggatatatcagaaatcaagtcaatctttggtgtcatttcagcttaaccgagag |
24256973 |
T |
|
| Q |
116 |
atacgaaaaggacgcaaagagaaataaatgaaatagaaagaaaat---------gagttgcggtgtgaataaagtgttggtcaataggtctaatttataa |
206 |
Q |
| |
|
||| ||||| ||||||||| ||| ||| ||| |||||| || |||||| |||||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
24256972 |
atatgaaaattacgcaaagaaaaagaaaggaatatgaaagacaactgcaaaacagagttgtggtgtgaagaaagtgttggccaataggtctactttataa |
24256873 |
T |
|
| Q |
207 |
tagattttagaggacaatt |
225 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
24256872 |
tagattttagaggacaatt |
24256854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 39439855 - 39439780
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttg |
92 |
Q |
| |
|
||||||||||||||| ||||| ||||| || ||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
39439855 |
caaaggcgaacgacttgaaccatgatagtccggttttctttggaaggggatatatcagagatcaagtcaatctttg |
39439780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 19815183 - 19815095
Alignment:
| Q |
18 |
aaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttg-ggccatttcgatt |
105 |
Q |
| |
|
|||||| ||||| ||||||||||||| || | |||||||||||| ||||||||| |||||||| || |||||||| ||||||||||||| |
|
|
| T |
19815183 |
aaaggcaaacgattcgaaccctgatagtccaattttctttggaaggggatatattagagatcatgtcaatctttgaggccatttcgatt |
19815095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 3649122 - 3649177
Alignment:
| Q |
170 |
tgtgaataaagtgttggtcaataggtctaatttataatagattttagaggacaatt |
225 |
Q |
| |
|
|||||| |||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3649122 |
tgtgaagaaagtgttggccaatagatctaatttataatagattttagaggacaatt |
3649177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 49715116 - 49715334
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||||| |||||||| | | |||| |
|
|
| T |
49715116 |
caaaggcgaacgactcgaaccctgatattccagttttctttggaaggggatatatcagaaatcaagtcaatctttggtgccatttcagcttaaccgagag |
49715215 |
T |
|
| Q |
116 |
atacgaaaaggacgcaaagagaaataaatgaaatagaaagaaaat---------gagttgcggtgtgaataaagtgttggtcaataggtctaatttataa |
206 |
Q |
| |
|
||||||||| ||||||||| ||| ||| ||| |||||| ||| || ||| |||||||| |||||||||| |||||| |||| ||||||| |
|
|
| T |
49715216 |
atacgaaaattacgcaaagaaaaagaaaggaatatgaaagacaattgcaaaacagaattgtggtgtgaagaaagtgttggccaatagatctactttataa |
49715315 |
T |
|
| Q |
207 |
tagattttagaggacaatt |
225 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
49715316 |
tagattttagaggacaatt |
49715334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 16013205 - 16013086
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttggg-ccatttcgattgagtatagag |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| | | |||| |
|
|
| T |
16013205 |
caaaggtgaacgactcgaaccctgatattccagttttctttggaatgggatatatcagagatcaagtcaatctttgggaccatttcgatttaatgaagag |
16013106 |
T |
|
| Q |
116 |
atacgaaaaggacgcaaaga |
135 |
Q |
| |
|
| || ||||| ||||||||| |
|
|
| T |
16013105 |
acacaaaaagtacgcaaaga |
16013086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 24201051 - 24201270
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||||| |||||||| | | |||| |
|
|
| T |
24201051 |
caaaggcggacgactcgaaccctgatatttcagttttctttggaaggggatatatcagaaatcaagtcaatctttggtgccatttcagcttaaccgagag |
24201150 |
T |
|
| Q |
116 |
atacgaaaaggacgcaaagagaaataaatgaaatagaaaga-aaatg---------agttgcggtgtgaataaagtgttggtcaataggtctaatttata |
205 |
Q |
| |
|
||||||||| ||||||||| ||| ||| ||| |||||| || || | || |||||||| |||||||||| |||||| ||||||||||| |
|
|
| T |
24201151 |
atacgaaaattacgcaaagaaaaagaaaggaatatgaaagacaactgcaaaacagaaactgtggtgtgaagaaagtgttggccaatagatctaatttata |
24201250 |
T |
|
| Q |
206 |
atagattttagaggacaatt |
225 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
24201251 |
atagattttagaggacaatt |
24201270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 4214340 - 4214264
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg |
93 |
Q |
| |
|
||||||||||||||||||| |||| ||||| | |||||||||||| ||||||||||||| ||||||| ||||||||| |
|
|
| T |
4214340 |
caaaggcgaacgactcgaatcctgctattccaattttctttggaaggggatatatcagaaatcaagtcaatctttgg |
4214264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 4214188 - 4214124
Alignment:
| Q |
161 |
gagttgcggtgtgaataaagtgttggtcaataggtctaatttataatagattttagaggacaatt |
225 |
Q |
| |
|
|||||| |||||||| |||||||||| |||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
4214188 |
gagttgtggtgtgaagaaagtgttggccaatagatctactttataatagattttagaggacaatt |
4214124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 16651677 - 16651459
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| ||||||| ||||||||| |||||||| | | |||| |
|
|
| T |
16651677 |
caaaggcgaacgactcgaaccctgatattccaattttctttggaaggggatatatcagaaatcaagtcaatctttggtgccatttcagcttaaccgagag |
16651578 |
T |
|
| Q |
116 |
atacgaaaaggacgcaaagagaaataaatgaaatagaaag---------aaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataa |
206 |
Q |
| |
|
||||||||| ||||||||| ||| ||| ||| ||||| ||| |||||| |||||||| |||||||||| |||||| |||| ||||||| |
|
|
| T |
16651577 |
atacgaaaattacgcaaagaaaaagaaaggaatatgaaagacaactgcaaaacagagttgtggtgtgaagaaagtgttggccaatagatctactttataa |
16651478 |
T |
|
| Q |
207 |
tagattttagaggacaatt |
225 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
16651477 |
tagattttagaggacaatt |
16651459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 2347355 - 2347419
Alignment:
| Q |
161 |
gagttgcggtgtgaataaagtgttggtcaataggtctaatttataatagattttagaggacaatt |
225 |
Q |
| |
|
|||||| |||||||| |||||||||| ||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
2347355 |
gagttgtggtgtgaagaaagtgttggccaatatgtctaatttataatagattttagagaacaatt |
2347419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 2347231 - 2347285
Alignment:
| Q |
48 |
agttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttc |
101 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
2347231 |
agttttctttggaaggggatatatcagaaatcaagtcgatctttggtgccatttc |
2347285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 131024 - 130806
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| ||||||| ||||||||| ||||||| | | |||| |
|
|
| T |
131024 |
caaaggcgaacgactcgaaccctgatattccaattttctttggaaggggatatatcagaaatcaagtcaatctttggtaccatttcagcttaaccgagag |
130925 |
T |
|
| Q |
116 |
atacgaaaaggacgcaaagagaaataaatgaaatagaaag---------aaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataa |
206 |
Q |
| |
|
||||||||| ||||||||| ||| ||| ||| ||||| ||| |||||| |||||||| |||||||||| |||||| |||| ||||||| |
|
|
| T |
130924 |
atacgaaaattacgcaaagaaaaagaaaagaatatgaaagacaactgcaaaacagagttgtggtgtgaagaaagtgttggccaatagatctactttataa |
130825 |
T |
|
| Q |
207 |
tagattttagaggacaatt |
225 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
130824 |
tagattttagaggacaatt |
130806 |
T |
|
Back To:
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Target: scaffold0002 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 308841 - 308623
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| ||||||| ||||||||| ||||||| | | |||| |
|
|
| T |
308841 |
caaaggcgaacgactcgaaccctgatattccaattttctttggaaggggatatatcagaaatcaagtcaatctttggtaccatttcagcttaaccgagag |
308742 |
T |
|
| Q |
116 |
atacgaaaaggacgcaaagagaaataaatgaaatagaaag---------aaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataa |
206 |
Q |
| |
|
||||||||| ||||||||| ||| ||| ||| ||||| ||| |||||| |||||||| |||||||||| |||||| |||| ||||||| |
|
|
| T |
308741 |
atacgaaaattacgcaaagaaaaagaaaagaatatgaaagacaactgcaaaacagagttgtggtgtgaagaaagtgttggccaatagatctactttataa |
308642 |
T |
|
| Q |
207 |
tagattttagaggacaatt |
225 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
308641 |
tagattttagaggacaatt |
308623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 21107427 - 21107209
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag |
115 |
Q |
| |
|
|||||||||||||||| |||||| |||||| | |||||||||||| ||||||||||||| ||||||| ||||||||| |||||||| | | |||| |
|
|
| T |
21107427 |
caaaggcgaacgactcaaaccctaatattccaattttctttggaaggggatatatcagaaatcaagtcaatctttggtgccatttcagcttaaccgagag |
21107328 |
T |
|
| Q |
116 |
atacgaaaaggacgcaaagagaaataaatgaaatagaaag---------aaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataa |
206 |
Q |
| |
|
||||||||| ||||||||| ||| ||| ||| ||||| ||| |||||| |||||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
21107327 |
atacgaaaattacgcaaagaaaaagaaaggaatatgaaagacaactgcaaaacagagttgtggtgtgaagaaagtgttggccaataggtctactttataa |
21107228 |
T |
|
| Q |
207 |
tagattttagaggacaatt |
225 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
21107227 |
tagattttagaggacaatt |
21107209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 19194852 - 19194657
Alignment:
| Q |
19 |
aaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatcttt-gggccatttcgattgagtatagagat |
117 |
Q |
| |
|
|||||||||| |||||||||||||||| || ||||||||||| |||||||| |||||||||||| ||||||| ||||||||| |||| | || ||||| |
|
|
| T |
19194852 |
aaggcgaacg--tcgaaccctgatattccagctttctttggaaggggatataccagagatcaagtcaatctttggggccattttgatttaatagagagac |
19194755 |
T |
|
| Q |
118 |
acgaaaaggacgcaaagagaaataaatgaaatagaaagaaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataatagattttaga |
217 |
Q |
| |
|
||| || || ||||||| ||| ||| |||||| ||||| ||||||||||||||||||| |||| | ||||||||||||| ||||| | |
|
|
| T |
19194754 |
acggaattgatgcaaagaaaaagaaacgaaata----------aagttgtggtgtgaataaagtgttggccaatggatctaatttataatgaatttttta |
19194665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 1422111 - 1422330
Alignment:
| Q |
18 |
aaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgggcca-tttcgattgagtatagaga |
116 |
Q |
| |
|
|||| ||||| || ||||| ||||||||| || ||||||||||| | |||||| |||| | ||||| ||||||| | || |||||||| | || ||||| |
|
|
| T |
1422111 |
aaagacgaacaacacgaactctgatattccagctttctttggaaggagatataacagaaaccaagtcgatctttgtgacaatttcgatttaataaagaga |
1422210 |
T |
|
| Q |
117 |
tacgaaaaggacgcaaagagaaataaatgaaatagaaaga--------aaat--gagttgcggtgtgaataaagtgttggtcaataggtctaatttataa |
206 |
Q |
| |
|
|||||| | |||||||||| ||| || ||||| | ||| | |||| |||||| ||| |||| |||||||||||||||||||||||| |||| |
|
|
| T |
1422211 |
tacgaagatgacgcaaagaaaaagaattgaaacataaacacaactgcaaaattagagttgtggtttgaagaaagtgttggtcaataggtctaatctatag |
1422310 |
T |
|
| Q |
207 |
tagattttagaggacaattt |
226 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1422311 |
tagattttagaggacaattt |
1422330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 37798856 - 37798638
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg-gccatttcgattgagtatagag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| ||||||| ||||||||| |||||||| | | |||| |
|
|
| T |
37798856 |
caaaggcgaacgactcgaaccctgatatttcaattttctttggaaggggatatatcagaaatcaagtcaatctttggtgccatttcagcttaaccgagag |
37798757 |
T |
|
| Q |
116 |
atacgaaaaggacgcaaagagaaataaatgaaatagaaag---------aaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataa |
206 |
Q |
| |
|
||||||||| ||||||||| ||| ||| ||| ||||| ||| |||||| |||||||| |||||||||| |||||| |||| ||||||| |
|
|
| T |
37798756 |
atacgaaaattacgcaaagaaaaagaaaggaatatgaaagacaactgcaaaacagagttgtggtgtgaagaaagtgttggccaatagatctactttataa |
37798657 |
T |
|
| Q |
207 |
tagattttagaggacaatt |
225 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
37798656 |
tagattttagaggacaatt |
37798638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 10014706 - 10014841
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatcttt-gggccatttcgattgagtatagag |
115 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||||| | | |||| |
|
|
| T |
10014706 |
caaatgcgaacgactcgaacc-tgatatttcagttttctttgtaatgggatatatcagagatcaagtcaatctttggggccatttcgatttaatgaagag |
10014804 |
T |
|
| Q |
116 |
atacgaaaaggacgcaaagagaaataaatgaaataga |
152 |
Q |
| |
|
| || ||||| ||||||||| ||| |||| ||||||| |
|
|
| T |
10014805 |
acacaaaaagtacgcaaagaaaaagaaataaaataga |
10014841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 10115347 - 10115482
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatcttt-gggccatttcgattgagtatagag |
115 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||||| | | |||| |
|
|
| T |
10115347 |
caaatgcgaacgactcgaacc-tgatatttcagttttctttgtaatgggatatatcagagatcaagtcaatctttggggccatttcgatttaatgaagag |
10115445 |
T |
|
| Q |
116 |
atacgaaaaggacgcaaagagaaataaatgaaataga |
152 |
Q |
| |
|
| || ||||| ||||||||| ||| |||| ||||||| |
|
|
| T |
10115446 |
acacaaaaagtacgcaaagaaaaagaaataaaataga |
10115482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 10252451 - 10252586
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatcttt-gggccatttcgattgagtatagag |
115 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||||| | | |||| |
|
|
| T |
10252451 |
caaatgcgaacgactcgaacc-tgatatttcagttttctttgtaatgggatatatcagagatcaagtcaatctttggggccatttcgatttaatgaagag |
10252549 |
T |
|
| Q |
116 |
atacgaaaaggacgcaaagagaaataaatgaaataga |
152 |
Q |
| |
|
| || ||||| ||||||||| ||| |||| ||||||| |
|
|
| T |
10252550 |
acacaaaaagtacgcaaagaaaaagaaataaaataga |
10252586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 57517 - 57712
Alignment:
| Q |
19 |
aaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatcttt-gggccatttcgattgagtatagagat |
117 |
Q |
| |
|
|||||||||| ||||||||||||||| || |||||||| || |||||||| |||||||||||| ||||||| ||||||||| |||| | || ||||| |
|
|
| T |
57517 |
aaggcgaacg--tcgaaccctgatatttcagctttctttgaaaggggatataccagagatcaagtcaatctttggggccattttgatttaatagagagac |
57614 |
T |
|
| Q |
118 |
acgaaaaggacgcaaagagaaataaatgaaatagaaagaaaatgagttgcggtgtgaataaagtgttggtcaataggtctaatttataatagattttaga |
217 |
Q |
| |
|
|||||| |||||||||| ||| ||| |||||| ||||| ||||||||||||||||||| |||| | ||||||||||||| ||||| | |
|
|
| T |
57615 |
acgaaattgacgcaaagaaaaagaaacgaaata----------aagttgtggtgtgaataaagtgttggccaatggatctaatttataatgaatttttta |
57704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 10046598 - 10046660
Alignment:
| Q |
19 |
aaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaa |
81 |
Q |
| |
|
||||| |||||||||||||||||||||| || ||||||| ||||||||||||||||||||||| |
|
|
| T |
10046598 |
aaggctaacgactcgaaccctgatattccagctttctttagaaagggatatatcagagatcaa |
10046660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 31502 - 31383
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatcttt-gggccatttcgattgagtatagag |
115 |
Q |
| |
|
|||||||||||||||| |||||||||| | |||||||||||||| ||||||||||||||||||||| ||||||| ||| |||||||||| | | |||| |
|
|
| T |
31502 |
caaaggcgaacgactcaaaccctgatagttcagttttctttggaaggggatatatcagagatcaagtcaatctttggggtcatttcgatttaatggagag |
31403 |
T |
|
| Q |
116 |
atacgaaaaggacgcaaaga |
135 |
Q |
| |
|
| |||||||| ||||||||| |
|
|
| T |
31402 |
acacgaaaagtacgcaaaga |
31383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0583 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0583
Description:
Target: scaffold0583; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 7427 - 7351
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaagggatatatcagagatcaagttaatctttgg |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| ||| ||||||| |||||||| |
|
|
| T |
7427 |
caaaggcgaacgactcgaaccctgatattccagttttctttggaaggggttatattagaaatcaagtcgatctttgg |
7351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0583; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 7301 - 7237
Alignment:
| Q |
161 |
gagttgcggtgtgaataaagtgttggtcaataggtctaatttataatagattttagaggacaatt |
225 |
Q |
| |
|
|||||| |||||||| || |||||| ||| ||||| |||||||||||| ||||||||||||||| |
|
|
| T |
7301 |
gagttgtggtgtgaagaatttgttggccaaaaggtcaaatttataatagcttttagaggacaatt |
7237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 45117001 - 45116915
Alignment:
| Q |
17 |
caaaggcgaacgactcgaaccctgatattctagttttctttggaaa-gggatatatcagagatcaagttaatctttgg-gccatttc |
101 |
Q |
| |
|
||||| |||| ||||||||| ||||||||||||||||||||||||| ||||||| | ||| ||||||| ||||||||| |||||||| |
|
|
| T |
45117001 |
caaagacgaatgactcgaactctgatattctagttttctttggaaaggggatatgttagaaatcaagtcaatctttggtgccatttc |
45116915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 45116845 - 45116781
Alignment:
| Q |
161 |
gagttgcggtgtgaataaagtgttggtcaataggtctaatttataatagattttagaggacaatt |
225 |
Q |
| |
|
|||||| |||||||| || ||||||| ||| ||||| |||||||||||| ||||||| ||||||| |
|
|
| T |
45116845 |
gagttgtggtgtgaagaatgtgttggccaaaaggtcaaatttataatagcttttagaagacaatt |
45116781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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