View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15420_high_13 (Length: 242)

Name: NF15420_high_13
Description: NF15420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15420_high_13
NF15420_high_13
[»] chr7 (16 HSPs)
chr7 (134-201)||(19735625-19735692)
chr7 (127-201)||(1964227-1964301)
chr7 (127-202)||(17503271-17503346)
chr7 (127-202)||(17549868-17549943)
chr7 (137-192)||(25173480-25173535)
chr7 (125-190)||(584070-584135)
chr7 (137-190)||(43786686-43786739)
chr7 (127-192)||(48767846-48767911)
chr7 (133-192)||(8055337-8055396)
chr7 (125-192)||(21294841-21294908)
chr7 (146-192)||(48294086-48294132)
chr7 (137-202)||(8352643-8352707)
chr7 (134-193)||(1837760-1837819)
chr7 (134-189)||(8488746-8488801)
chr7 (127-192)||(27399762-27399827)
chr7 (137-189)||(38974849-38974900)
[»] chr2 (8 HSPs)
chr2 (121-192)||(21848248-21848319)
chr2 (134-192)||(3703522-3703580)
chr2 (137-202)||(25749915-25749980)
chr2 (137-192)||(2968891-2968946)
chr2 (160-202)||(27957540-27957582)
chr2 (150-192)||(12016287-12016329)
chr2 (137-190)||(12184735-12184788)
chr2 (137-201)||(42029620-42029683)
[»] chr1 (14 HSPs)
chr1 (127-202)||(46688785-46688859)
chr1 (159-202)||(50011733-50011776)
chr1 (159-199)||(5939814-5939854)
chr1 (127-190)||(26991801-26991864)
chr1 (126-193)||(38790604-38790671)
chr1 (127-190)||(49650119-49650182)
chr1 (160-202)||(28522938-28522980)
chr1 (126-192)||(27163079-27163145)
chr1 (127-192)||(23082429-23082494)
chr1 (137-190)||(30627170-30627223)
chr1 (137-190)||(35718872-35718925)
chr1 (127-183)||(12705219-12705275)
chr1 (136-192)||(18898191-18898247)
chr1 (160-192)||(45371203-45371235)
[»] chr5 (9 HSPs)
chr5 (127-201)||(4898182-4898256)
chr5 (22-111)||(17803210-17803308)
chr5 (134-192)||(31046423-31046481)
chr5 (137-192)||(31066368-31066423)
chr5 (126-192)||(30312990-30313056)
chr5 (126-192)||(30350410-30350476)
chr5 (137-192)||(4396221-4396276)
chr5 (128-191)||(8516953-8517016)
chr5 (137-189)||(2553196-2553248)
[»] chr6 (7 HSPs)
chr6 (125-192)||(6812053-6812120)
chr6 (137-202)||(27753146-27753211)
chr6 (125-202)||(31766448-31766525)
chr6 (127-202)||(29465324-29465399)
chr6 (145-190)||(10373800-10373845)
chr6 (147-191)||(17096431-17096475)
chr6 (126-190)||(19687610-19687674)
[»] chr3 (15 HSPs)
chr3 (127-202)||(47142747-47142822)
chr3 (127-192)||(1151622-1151687)
chr3 (137-202)||(25701592-25701657)
chr3 (137-192)||(1559625-1559680)
chr3 (134-202)||(40242641-40242710)
chr3 (137-202)||(46981819-46981884)
chr3 (145-201)||(7325571-7325627)
chr3 (134-192)||(31833957-31834015)
chr3 (127-191)||(3935770-3935834)
chr3 (128-190)||(55222401-55222463)
chr3 (137-190)||(19611149-19611202)
chr3 (137-193)||(23059103-23059159)
chr3 (127-175)||(28131342-28131390)
chr3 (158-202)||(32721915-32721959)
chr3 (127-192)||(32552306-32552371)
[»] chr4 (15 HSPs)
chr4 (127-192)||(38068088-38068153)
chr4 (127-192)||(27064480-27064545)
chr4 (127-192)||(27085584-27085649)
chr4 (137-201)||(56397127-56397191)
chr4 (126-193)||(30482943-30483010)
chr4 (134-192)||(19853994-19854052)
chr4 (142-202)||(37450811-37450870)
chr4 (158-201)||(4711581-4711624)
chr4 (127-190)||(12191524-12191587)
chr4 (137-193)||(13665802-13665858)
chr4 (137-193)||(13678659-13678715)
chr4 (127-191)||(38168163-38168227)
chr4 (137-192)||(36904174-36904229)
chr4 (127-190)||(44991793-44991856)
chr4 (137-185)||(17058852-17058900)
[»] chr8 (11 HSPs)
chr8 (127-192)||(22800602-22800667)
chr8 (137-192)||(7177097-7177152)
chr8 (127-189)||(12795967-12796029)
chr8 (140-192)||(22324350-22324402)
chr8 (127-190)||(1581489-1581552)
chr8 (145-192)||(8693076-8693123)
chr8 (136-191)||(13282128-13282183)
chr8 (145-191)||(15451256-15451302)
chr8 (127-192)||(11989743-11989808)
chr8 (137-190)||(12532364-12532417)
chr8 (137-190)||(14523207-14523260)
[»] scaffold0086 (1 HSPs)
scaffold0086 (137-190)||(33264-33317)
[»] scaffold0110 (2 HSPs)
scaffold0110 (145-201)||(13663-13720)
scaffold0110 (145-201)||(21400-21457)
[»] scaffold0568 (1 HSPs)
scaffold0568 (137-185)||(785-833)


Alignment Details
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 201
Target Start/End: Complemental strand, 19735692 - 19735625
Alignment:
Q  134 ataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttattacttctttt 201  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  19735692 ataaaaagtacttaaataggtctcactaactttatatcattatacaaaaataatttattacttctttt 19735625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 1964227 - 1964301
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttattacttctttt 201  Q
    |||||| |||||||||| |||||||| ||  |||||||||||||||||||| |||||||||||||||||||||||    
T  1964227 gactccaataaaaagtatttaaatagatcccactaactttacatcattatataaaaataatttattacttctttt 1964301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 17503271 - 17503346
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttattacttcttttg 202  Q
    |||||| ||||||| |||||||||| |||  | ||||||||||| |||||||||||||||||||||||||||||||    
T  17503271 gactccaataaaaaatacttaaataagtcccagtaactttacataattatacaaaaataatttattacttcttttg 17503346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 17549943 - 17549868
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttattacttcttttg 202  Q
    |||||| ||||||| |||||||||| |||  | ||||||||||| |||||||||||||||||||||||||||||||    
T  17549943 gactccaataaaaaatacttaaataagtcccagtaactttacataattatacaaaaataatttattacttcttttg 17549868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 25173535 - 25173480
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  25173535 aaaagtacttaaataggtctcactaattttacatcattatacaaaagtaatttatt 25173480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 584135 - 584070
Alignment:
Q  125 aagactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataattta 190  Q
    |||||||| || ||||||||||||||| |||| |||| ||||||||||||| ||||||||||||||    
T  584135 aagactccaatgaaaagtacttaaatatgtctcactatctttacatcattaaacaaaaataattta 584070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 43786739 - 43786686
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataattta 190  Q
    ||||||||||||||| |||| |||| ||||||||||||| ||||||||||||||    
T  43786739 aaaagtacttaaatatgtctcactatctttacatcattaaacaaaaataattta 43786686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 48767911 - 48767846
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||||| || |||||| |||||||| |||| ||||||||||||||||||||||||| |||| ||||    
T  48767911 gactccaatgaaaagtgcttaaatatgtctcactaactttacatcattatacaaaagtaatatatt 48767846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 8055337 - 8055396
Alignment:
Q  133 gataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    ||||||||||  |||||||||||| |||||||||||||||||| | |||| |||||||||    
T  8055337 gataaaaagtgattaaataggtctcactaactttacatcattacataaaagtaatttatt 8055396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 21294908 - 21294841
Alignment:
Q  125 aagactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||||||| || |||| || ||||||| ||| ||||||||||||||||||| ||| ||||||||||||    
T  21294908 aagactccaattaaaaatatttaaatatgtcctactaactttacatcattaaacacaaataatttatt 21294841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 48294086 - 48294132
Alignment:
Q  146 taaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||||    
T  48294086 taaataggtcccactaactttacatcattaaacaaaaataatttatt 48294132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 8352707 - 8352643
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttattacttcttttg 202  Q
    |||| |||||||||| |||| |||||||||||||||||| | ||||| || |||||||||||||||    
T  8352707 aaaaatacttaaataagtctcactaactttacatcatta-aaaaaaaaaaattattacttcttttg 8352643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 1837819 - 1837760
Alignment:
Q  134 ataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatta 193  Q
    |||||||||||||||||| | |  ||||||||| |||||||| |||||| ||||||||||    
T  1837819 ataaaaagtacttaaatatgccccactaactttgcatcattaaacaaaagtaatttatta 1837760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 8488746 - 8488801
Alignment:
Q  134 ataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataattt 189  Q
    ||||||| |||||||||| |||  |||| ||||||||||||| |||||||||||||    
T  8488746 ataaaaaatacttaaatatgtcccactatctttacatcattaaacaaaaataattt 8488801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 27399827 - 27399762
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||||| || ||||||| ||||||||||   |||| |||||||||||||| ||||| |||||||||    
T  27399827 gactccaatgaaaagtaattaaataggttccactacctttacatcattatgcaaaagtaatttatt 27399762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 38974849 - 38974900
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataattt 189  Q
    ||||||||||||||||| |  |||||||| ||||||||| |||||||||||||    
T  38974849 aaaagtacttaaataggccccactaactt-acatcattaaacaaaaataattt 38974900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 21848248 - 21848319
Alignment:
Q  121 aatcaagactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||||||||||| ||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  21848248 aatcaagactccaataaaaagtacttaaataggtcccactaactttatatcattatacaaaaataatttatt 21848319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 3703522 - 3703580
Alignment:
Q  134 ataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||||||||||||| |||||||  |||||||||||||||||| ||||||||||||||||    
T  3703522 ataaaaagtacttatataggtcccactaactttacatcattaaacaaaaataatttatt 3703580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 25749915 - 25749980
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttattacttcttttg 202  Q
    |||| |||||||||| |||  ||||||||||||| ||||||||||||||||||||||||| |||||    
T  25749915 aaaaatacttaaatatgtcccactaactttacattattatacaaaaataatttattacttattttg 25749980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 2968891 - 2968946
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||||||||||||||||    |||||||||||||||||| ||||||||||||||||    
T  2968891 aaaagtacttaaataggctccactaactttacatcattaaacaaaaataatttatt 2968946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 27957582 - 27957540
Alignment:
Q  160 taactttacatcattatacaaaaataatttattacttcttttg 202  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  27957582 taactttacatcattttacaaaaataatttattatttcttttg 27957540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 12016329 - 12016287
Alignment:
Q  150 taggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||    
T  12016329 taggtctcactaactttacatcattatactaaagtaatttatt 12016287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 12184788 - 12184735
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataattta 190  Q
    ||||||||||||||| |||  |||| ||||||||||||| ||||| ||||||||    
T  12184788 aaaagtacttaaatatgtcccactatctttacatcattaaacaaatataattta 12184735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 42029620 - 42029683
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttattacttctttt 201  Q
    |||| ||||||||||  ||  |||||||||||||||||| |||||||||| |||||| |||||||    
T  42029620 aaaaatacttaaataaatccaactaactttacatcattaaacaaaaataa-ttattatttctttt 42029683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 46688785 - 46688859
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttattacttcttttg 202  Q
    |||||| || ||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||    
T  46688785 gactccaatgaaaagtacttaaataggccc-actaactttacatcattatacaaaaataatttattacttcttttg 46688859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 50011733 - 50011776
Alignment:
Q  159 ctaactttacatcattatacaaaaataatttattacttcttttg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  50011733 ctaactttacatcattatacaaaaataatttattacttcttttg 50011776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 5939854 - 5939814
Alignment:
Q  159 ctaactttacatcattatacaaaaataatttattacttctt 199  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5939854 ctaactttacatcattatacaaaaataatttattacttctt 5939814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 26991801 - 26991864
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataattta 190  Q
    |||||| || ||||||||||||||| |||| |||| ||||||||||||| ||||||||||||||    
T  26991801 gactccaatgaaaagtacttaaatatgtctcactatctttacatcattaaacaaaaataattta 26991864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 38790604 - 38790671
Alignment:
Q  126 agactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatta 193  Q
    ||||||| || |||| | |||||||| |||| ||||||||||||||||||||||||| ||||||||||    
T  38790604 agactccaatgaaaaatgcttaaataagtctcactaactttacatcattatacaaaagtaatttatta 38790671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 49650182 - 49650119
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataattta 190  Q
    |||||| || ||||||||||||||| |||| |||| ||||||||||||| ||||||||||||||    
T  49650182 gactccaatgaaaagtacttaaatatgtctcactatctttacatcattaaacaaaaataattta 49650119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 28522938 - 28522980
Alignment:
Q  160 taactttacatcattatacaaaaataatttattacttcttttg 202  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  28522938 taactttatatcattatgcaaaaataatttattacttcttttg 28522980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 27163079 - 27163145
Alignment:
Q  126 agactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    ||||||| || |||| | |||||||||||   ||||||||||||| ||||||||||| |||||||||    
T  27163079 agactccaatgaaaaatgcttaaataggtgacactaactttacataattatacaaaagtaatttatt 27163145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 23082494 - 23082429
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||||| || |||| |||||||||||   | |||||||||||| ||||| ||||||||||||||||    
T  23082494 gactccaatgaaaaatacttaaatagacttcactaactttacaacattaaacaaaaataatttatt 23082429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 30627170 - 30627223
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataattta 190  Q
    |||| |||||||||| |||  |||| ||||||||||||| ||||||||||||||    
T  30627170 aaaaatacttaaatatgtcccactatctttacatcattaaacaaaaataattta 30627223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 35718872 - 35718925
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataattta 190  Q
    ||||||||||||||| |||| |||| |||||| | |||| ||||||||||||||    
T  35718872 aaaagtacttaaatatgtctcactatctttactttattaaacaaaaataattta 35718925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 12705219 - 12705275
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaa 183  Q
    |||||| || ||||||||||||||| |||| |||| | ||||||||||| |||||||    
T  12705219 gactccaatgaaaagtacttaaatatgtctcactatcattacatcattaaacaaaaa 12705275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 18898191 - 18898247
Alignment:
Q  136 aaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||||||||||| ||| |||  |||||||||| ||||||||||||||  ||||||||    
T  18898191 aaaaagtacttacataagtcccactaactttatatcattatacaaaagcaatttatt 18898247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 45371235 - 45371203
Alignment:
Q  160 taactttacatcattatacaaaaataatttatt 192  Q
    |||||||||||||||| ||||||||||||||||    
T  45371235 taactttacatcattaaacaaaaataatttatt 45371203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 4898256 - 4898182
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttattacttctttt 201  Q
    |||||| || ||||||||||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||    
T  4898256 gactccaatgaaaagtacttaaataagtctcactagctttacattattatacaaaaataatttattacttctttt 4898182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 17803210 - 17803308
Alignment:
Q  22 attcataaaatagtatcgtttgcatttttcagaaatttaagtatttgaaggaaacga--------aagtgtcaatccttaaagaaagta-ctgacatgt 111  Q
    |||||||||||||||| ||||  ||||||||||||||||||| ||||||||||| ||        |||||||||||||||||||||||| |||||||||    
T  17803210 attcataaaatagtattgtttctatttttcagaaatttaagtctttgaaggaaatgaagataagcaagtgtcaatccttaaagaaagtacctgacatgt 17803308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 31046423 - 31046481
Alignment:
Q  134 ataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    ||||||| |||||||||| |||  ||||||||||||||||||||||||| |||||||||    
T  31046423 ataaaaaatacttaaatatgtccgactaactttacatcattatacaaaagtaatttatt 31046481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 31066368 - 31066423
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||| |||||||||| |||  ||||||||||||||||||||||||| |||||||||    
T  31066368 aaaaatacttaaatatgtcccactaactttacatcattatacaaaagtaatttatt 31066423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 30312990 - 30313056
Alignment:
Q  126 agactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    ||||||| || |||| || ||||  |||||| |||||||||||||||||| ||||||||||||||||    
T  30312990 agactccaatgaaaaatatttaatcaggtctcactaactttacatcattaaacaaaaataatttatt 30313056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 30350410 - 30350476
Alignment:
Q  126 agactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    ||||||| || |||| || ||||  |||||| |||||||||||||||||| ||||||||||||||||    
T  30350410 agactccaatgaaaaatatttaatcaggtctcactaactttacatcattaaacaaaaataatttatt 30350476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 4396276 - 4396221
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||| |||||||||||| |  |||||||||||||||||||| |||| |||||||||    
T  4396276 aaaaatacttaaataggccacactaactttacatcattataaaaaagtaatttatt 4396221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 8516953 - 8517016
Alignment:
Q  128 actccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttat 191  Q
    ||||| ||||||| |||||||||| ||   |||| ||||||||||||| |||||||||||||||    
T  8516953 actccaataaaaaatacttaaatatgttccactatctttacatcattaaacaaaaataatttat 8517016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 2553248 - 2553196
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataattt 189  Q
    |||||||||||||||  | | ||||||||||||||||||  ||||||||||||    
T  2553248 aaaagtacttaaatatatttcactaactttacatcattaaccaaaaataattt 2553196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 6812120 - 6812053
Alignment:
Q  125 aagactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||||||| || ||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  6812120 aagactccaatgaaaagtacttaaataggttccactaactttacatcattatacaaaaataatttatt 6812053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 27753146 - 27753211
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttattacttcttttg 202  Q
    ||||||||||||||| |||  |||||||||||| ||||| |||||| |||||||||||||||||||    
T  27753146 aaaagtacttaaataagtcccactaactttacaacattaaacaaaactaatttattacttcttttg 27753211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 31766448 - 31766525
Alignment:
Q  125 aagactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttattacttcttttg 202  Q
    |||||||| ||||| ||||||||||||| ||  ||||||||||||| ||||||||||||| |||||| |||| |||||    
T  31766448 aagactccaataaagagtacttaaatagatcccactaactttacattattatacaaaaattatttataacttattttg 31766525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 29465324 - 29465399
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttattacttcttttg 202  Q
    |||||| || |||| | ||||||||| ||| ||||| ||||||||||||||||||| || ||||||| ||||||||    
T  29465324 gactccaatgaaaaattcttaaatagatctcactaagtttacatcattatacaaaattagtttattatttcttttg 29465399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 10373800 - 10373845
Alignment:
Q  145 ttaaataggtcttactaactttacatcattatacaaaaataattta 190  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||    
T  10373800 ttaaataggtctcactaactttacatcgttatacaaaagtaattta 10373845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 17096431 - 17096475
Alignment:
Q  147 aaataggtcttactaactttacatcattatacaaaaataatttat 191  Q
    ||||||||| ||||| ||||||||||||| |||||||||||||||    
T  17096431 aaataggtcctactatctttacatcattaaacaaaaataatttat 17096475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 19687674 - 19687610
Alignment:
Q  126 agactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataattta 190  Q
    ||||||| || ||||||||||||||| |||  | || ||||||||||||| ||||||||||||||    
T  19687674 agactccaatgaaaagtacttaaatatgtcccagtatctttacatcattaaacaaaaataattta 19687610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 47142822 - 47142747
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttattacttcttttg 202  Q
    |||||| || |||| ||||||||||||||| ||||||||||||||| || |||||||||||||||||||| |||||    
T  47142822 gactccaatgaaaactacttaaataggtctcactaactttacatcactaaacaaaaataatttattacttattttg 47142747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 1151622 - 1151687
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||||| |||||||||||||||||||| |  |||||||||||||||||| ||||||||||||||||    
T  1151622 gactccaataaaaagtacttaaataggccccactaactttacatcattaaacaaaaataatttatt 1151687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 25701592 - 25701657
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttattacttcttttg 202  Q
    ||||||||||||||| |||| || |||||||||| |||||||||||||||||||||| ||||||||    
T  25701592 aaaagtacttaaataagtctcaccaactttacattattatacaaaaataatttattatttcttttg 25701657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 1559625 - 1559680
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  1559625 aaaaatacttaaataggtctcactaactttacatcattatacaaaaattatttatt 1559680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 40242710 - 40242641
Alignment:
Q  134 ataaaaagtacttaaataggtcttactaactttacatcattataca-aaaataatttattacttcttttg 202  Q
    |||||||||||||||||| || ||| ||||||||||| |||||||| ||||||||| |||||||||||||    
T  40242710 ataaaaagtacttaaatatgttttattaactttacattattatacaaaaaataattaattacttcttttg 40242641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 46981884 - 46981819
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttattacttcttttg 202  Q
    |||||||  |||||| |||| ||||||||||||||||||||||||| ||||| |||||||||||||    
T  46981884 aaaagtatctaaataagtctcactaactttacatcattatacaaaagtaattcattacttcttttg 46981819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 7325571 - 7325627
Alignment:
Q  145 ttaaataggtcttactaactttacatcattatacaaaaataatttattacttctttt 201  Q
    |||||||  ||| |||||||||||||||||| |||||||||||||||||||||||||    
T  7325571 ttaaatatttctcactaactttacatcattaaacaaaaataatttattacttctttt 7325627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 31834015 - 31833957
Alignment:
Q  134 ataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    ||||||| ||||||||||| ||  |||||||||||||||||| ||||||||||||||||    
T  31834015 ataaaaaatacttaaatagatcccactaactttacatcattaaacaaaaataatttatt 31833957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 3935770 - 3935834
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttat 191  Q
    |||||| || ||||||||||||||| |||| | || ||||||||||||| |||||||||||||||    
T  3935770 gactccaatgaaaagtacttaaatatgtctcattatctttacatcattaaacaaaaataatttat 3935834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 55222463 - 55222401
Alignment:
Q  128 actccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataattta 190  Q
    ||||| || |||| |||||||||| |||| |||| ||||||||||||| ||||||||||||||    
T  55222463 actccaatgaaaattacttaaatatgtctcactatctttacatcattaaacaaaaataattta 55222401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 19611202 - 19611149
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataattta 190  Q
    ||||||||||||||| |||  |||| ||||||||||||| ||||||||||||||    
T  19611202 aaaagtacttaaatatgtcccactatctttacatcattaaacaaaaataattta 19611149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 23059159 - 23059103
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatta 193  Q
    ||||||||||||||| | |  ||||||||| |||||||| |||||||||||||||||    
T  23059159 aaaagtacttaaatatgccccactaactttgcatcattaaacaaaaataatttatta 23059103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 28131390 - 28131342
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcatta 175  Q
    |||||| ||||||| |||||||||| |||| ||||||||||||||||||    
T  28131390 gactcccataaaaattacttaaataagtctcactaactttacatcatta 28131342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 32721915 - 32721959
Alignment:
Q  158 actaactttacatcattatacaaaaataatttattacttcttttg 202  Q
    ||||||||||||||||||| ||||| ||||||||||| |||||||    
T  32721915 actaactttacatcattattcaaaagtaatttattacatcttttg 32721959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 32552371 - 32552306
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||||| || |||| ||||||||||||||  | |||||||||||||||| ||||||| || |||||    
T  32552371 gactccaatgaaaaatacttaaataggtcccattaactttacatcattaaacaaaaaaaaattatt 32552306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 38068153 - 38068088
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||||| |||||||||||||||||||| |  |||||||||||||||||| ||||||||||||||||    
T  38068153 gactccaataaaaagtacttaaataggccccactaactttacatcattaaacaaaaataatttatt 38068088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 27064480 - 27064545
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||||| ||||||| |  ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  27064480 gactccaataaaaactgtttaaatatgtctcactaactttacatcattatacaaaaataatttatt 27064545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 27085584 - 27085649
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||||| ||||||| |  ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  27085584 gactccaataaaaactgtttaaatatgtctcactaactttacatcattatacaaaaataatttatt 27085649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 56397127 - 56397191
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttattacttctttt 201  Q
    |||| |||||||||| || | | |||||||||||||||||||||||||||||||| |||||||||    
T  56397127 aaaaatacttaaatatgtgtcattaactttacatcattatacaaaaataatttataacttctttt 56397191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 30482943 - 30483010
Alignment:
Q  126 agactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatta 193  Q
    ||||||| ||||||| || |||||||||||  | ||||||||||||||||||||||| ||||||||||    
T  30482943 agactccaataaaaaatatttaaataggtcgcattaactttacatcattatacaaaagtaatttatta 30483010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 19854052 - 19853994
Alignment:
Q  134 ataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||||||||||||||||||| |  |||||||||||||||| | ||||||||||||||||    
T  19854052 ataaaaagtacttaaataggccccactaactttacatcatcaaacaaaaataatttatt 19853994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 37450870 - 37450811
Alignment:
Q  142 tacttaaataggtcttactaactttacatcattatacaaaaataatttattacttcttttg 202  Q
    ||||||||||||||  ||||| ||||||||||||  |||||||||||||||||||||||||    
T  37450870 tacttaaataggtcc-actaattttacatcattacccaaaaataatttattacttcttttg 37450811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 201
Target Start/End: Complemental strand, 4711624 - 4711581
Alignment:
Q  158 actaactttacatcattatacaaaaataatttattacttctttt 201  Q
    |||||||||||||||||| ||||||||||||||||| |||||||    
T  4711624 actaactttacatcattaaacaaaaataatttattatttctttt 4711581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 12191587 - 12191524
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataattta 190  Q
    |||||| || |||| |||||||||| |||| |||| ||||||||||||| ||||||||||||||    
T  12191587 gactccaatgaaaaatacttaaatatgtctcactatctttacatcattaaacaaaaataattta 12191524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 13665802 - 13665858
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatta 193  Q
    ||||||||||||||| | |  ||||||||| |||||||| |||||||||||||||||    
T  13665802 aaaagtacttaaatatgccccactaactttgcatcattaaacaaaaataatttatta 13665858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 13678659 - 13678715
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatta 193  Q
    ||||||||||||||| | |  ||||||||| |||||||| |||||||||||||||||    
T  13678659 aaaagtacttaaatatgccccactaactttgcatcattaaacaaaaataatttatta 13678715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 38168163 - 38168227
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttat 191  Q
    |||||| || ||||||||||||||| | |  ||||| |||||||||||| |||||||||||||||    
T  38168163 gactccaatgaaaagtacttaaataagccccactaattttacatcattaaacaaaaataatttat 38168227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 36904229 - 36904174
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||| ||||||||||||    |||||||||||||||||| ||||||||||||||||    
T  36904229 aaaaatacttaaataggctccactaactttacatcattaaacaaaaataatttatt 36904174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 44991793 - 44991856
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataattta 190  Q
    |||||| || |||| |||||||||| |||  |||| ||||||||||||| ||||||||||||||    
T  44991793 gactccaatgaaaaatacttaaatatgtcccactatctttacatcattaaacaaaaataattta 44991856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 17058852 - 17058900
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaata 185  Q
    ||||||||||||||||| |  |||| ||||||||||||| |||||||||    
T  17058852 aaaagtacttaaataggccccactatctttacatcattaaacaaaaata 17058900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 22800602 - 22800667
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||||| || ||| |||||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  22800602 gactccaatgaaatgtacttaaataggtcccactaactttacatcattatacaaaagtaatttatt 22800667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 7177097 - 7177152
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    ||||||||||||||| |||  |||||||||||| ||||||||||||||||||||||    
T  7177097 aaaagtacttaaataagtcccactaactttacaccattatacaaaaataatttatt 7177152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 12795967 - 12796029
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataattt 189  Q
    |||||| || ||||||||||||||||| |  |||||||||||||||||| |||||||||||||    
T  12795967 gactccaatgaaaagtacttaaataggccccactaactttacatcattaaacaaaaataattt 12796029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 22324402 - 22324350
Alignment:
Q  140 agtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||| |||| ||||||| ||||||||||||||||||||||||||| |||||||    
T  22324402 agtatttaagtaggtctcactaactttacatcattatacaaaaattatttatt 22324350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 1581552 - 1581489
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataattta 190  Q
    |||||| || ||||||||||||||| |||  |||| ||||||||||||| ||||||||||||||    
T  1581552 gactccaatgaaaagtacttaaatatgtcccactatctttacatcattaaacaaaaataattta 1581489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 8693076 - 8693123
Alignment:
Q  145 ttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  8693076 ttaaataggtcctactaactttacattattatacaaaagtaatttatt 8693123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 13282183 - 13282128
Alignment:
Q  136 aaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttat 191  Q
    |||||||| |||||||| ||  |||||||||||||||||| |||||| ||||||||    
T  13282183 aaaaagtaattaaatagatcccactaactttacatcattaaacaaaactaatttat 13282128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 15451302 - 15451256
Alignment:
Q  145 ttaaataggtcttactaactttacatcattatacaaaaataatttat 191  Q
    |||||||||||| | |||||||||||||||||||| || ||||||||    
T  15451302 ttaaataggtctcattaactttacatcattatacataattaatttat 15451256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 11989743 - 11989808
Alignment:
Q  127 gactccgataaaaagtacttaaataggtcttactaactttacatcattatacaaaaataatttatt 192  Q
    |||||| || |||||| |||||||| |||| ||||| |||||||||||||  |||| |||||||||    
T  11989743 gactccaatgaaaagtgcttaaatatgtctcactaattttacatcattatgtaaaagtaatttatt 11989808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 12532364 - 12532417
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataattta 190  Q
    ||||||||||||| | |||  |||| ||||||||||||| ||||||||||||||    
T  12532364 aaaagtacttaaacatgtcccactatctttacatcattaaacaaaaataattta 12532417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 14523207 - 14523260
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataattta 190  Q
    ||||||||||||||| ||   |||| ||||||||||||| ||||||||||||||    
T  14523207 aaaagtacttaaatatgttccactatctttacatcattaaacaaaaataattta 14523260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 33264 - 33317
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaataattta 190  Q
    |||||||||||||||||||| |||| ||||||||||||| | ||||||||||||    
T  33264 aaaagtacttaaataggtctcactatctttacatcattaaataaaaataattta 33317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 13720 - 13663
Alignment:
Q  145 ttaaataggtcttactaactttacatcattatacaaaaataatttatta-cttctttt 201  Q
    |||||||||||  |||||||||||||||||||| ||||||||| ||||| ||||||||    
T  13720 ttaaataggtcccactaactttacatcattatataaaaataatctattagcttctttt 13663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 21457 - 21400
Alignment:
Q  145 ttaaataggtcttactaactttacatcattatacaaaaataatttatta-cttctttt 201  Q
    |||||||||||  |||||||||||||||||||| ||||||||| ||||| ||||||||    
T  21457 ttaaataggtcccactaactttacatcattatataaaaataatctattagcttctttt 21400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0568 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 785 - 833
Alignment:
Q  137 aaaagtacttaaataggtcttactaactttacatcattatacaaaaata 185  Q
    ||||||||||||||||| |  |||| ||||||||||||| |||||||||    
T  785 aaaagtacttaaataggccccactatctttacatcattaaacaaaaata 833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University