View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15420_high_3 (Length: 574)
Name: NF15420_high_3
Description: NF15420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15420_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 209 - 546
Target Start/End: Original strand, 44515685 - 44516025
Alignment:
| Q |
209 |
ggaagacaaggtaaacc-ttaaatataacttttaatttatgtctttaattggtgtctgaattcgagggctgtctaggcgatatgaa--cttgaattttca |
305 |
Q |
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| T |
44515685 |
ggaagacaaggtaaaccattaaatataacttttaatttatgtctttaattggtgtctgaatccgagggttgtctaggtgatatgaagacttgaattttca |
44515784 |
T |
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| Q |
306 |
gtgatgttgtcttggtgattctgatctgtttctgtttgagcagaattataggtgtccgtctcttgtttgtgtttactttattttggaggatcttcggatt |
405 |
Q |
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| T |
44515785 |
gtgatgttgtcttagtgattctgatccgtttctgtttgagcagaattataggcgtctgtctcttgtttgtgtttactttattttgggggatcttcggatt |
44515884 |
T |
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| Q |
406 |
ttgttttcatgaggtacctttgttgttggttgtgatttaaactgtggttcttgagttttaagttgcagttcagctattcannnnnnngtcagattgggtt |
505 |
Q |
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| T |
44515885 |
ttgttttcatgaggcacctttgttgttggttgtgatttaaactgtggttcctaagttttaatttgcagttcagctattcatttttttgtcagattgggtt |
44515984 |
T |
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| Q |
506 |
tgagtacaggtcggagcatcgcttatggagccattgtgata |
546 |
Q |
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| T |
44515985 |
tgagtacaggtcggagcatcgcttatggagccattgtgata |
44516025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 44515625 - 44515692
Alignment:
| Q |
1 |
ttccgactgaaaaggccttcaaatatactggactacctgtggtttcttatgcaaatgagtggaagaca |
68 |
Q |
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| T |
44515625 |
ttccgactgaaaaggccttcaaatatactggactacctgtggtttcttatgcaaatgagtggaagaca |
44515692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 257 - 511
Target Start/End: Complemental strand, 29121146 - 29120889
Alignment:
| Q |
257 |
tggtgtctgaattcgagggc-tgtctaggcgatatgaa--cttgaattttcagtgatgttgtcttggtgattctgatctgtttctgtttgagcagaatta |
353 |
Q |
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| T |
29121146 |
tggtgtttgaatccgagggcgtgtctaggcgatatgaagacttgaattttcagcattgttgtcttggtgtttctgatccttgtctgtttgagcagaagta |
29121047 |
T |
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| Q |
354 |
taggtgtccgtctcttgtttgtgtttactttattttggaggatcttcggattttgttttcatgaggtacctttgttgttggttgtgatttaaactgtggt |
453 |
Q |
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| T |
29121046 |
caggtgtccttcttttgtttgtgtttgctttagtttaagggatctttgaattttgtttttgtgaggcatctttgttgttggttgtgatttaaactgtggt |
29120947 |
T |
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| Q |
454 |
tcttgagttttaagttgcagttcagctattcannnnnnngtcagattgggtttgagta |
511 |
Q |
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| T |
29120946 |
ttttgagattttatttgcagttcagctgttcgttttttagtcagattgggtttgagta |
29120889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 255 - 460
Target Start/End: Original strand, 1917411 - 1917618
Alignment:
| Q |
255 |
attggtgtctgaattcgagggc-tgtctaggcgatatgaa--cttgaattttcagtgatgttgtcttggtgattctgatctgtttctgtttgagcagaat |
351 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||| |||||| |||||| ||||||||||||| |||||||| | ||||| |||| |||| |
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| T |
1917411 |
attggtgtctgaatccgagggcatgtctaggcgatatgaagacttgaactttcagcattgttgtcttggtgtttctgatccttgtctgtatgagtagaag |
1917510 |
T |
|
| Q |
352 |
tataggtgtccgtctcttgtttgtgtttactttattttggaggatcttcggattttgttttcatgaggtacctttgttgttggttgtgatttaaactgtg |
451 |
Q |
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| T |
1917511 |
tacaggtgtccgtctcttgtttgtgtttgctttagtttgg-ggatctttggattttgtttttgtgaggcatatttattgttggtcgtgatctaaactgtg |
1917609 |
T |
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| Q |
452 |
gttcttgag |
460 |
Q |
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| T |
1917610 |
gttcctgag |
1917618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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