View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15420_high_7 (Length: 417)
Name: NF15420_high_7
Description: NF15420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15420_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 236 - 406
Target Start/End: Complemental strand, 25320803 - 25320633
Alignment:
| Q |
236 |
ctctccttttattcttgacatattgaaaggagtggatcaaatgtcaaaggttattttgtatggtgcttattggatgcgttcgaattaatgggtggatatg |
335 |
Q |
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| T |
25320803 |
ctctccttttattcttgacatattgaaaggagtggatcaaatgtcaaaggttattttgtatggtgcttattggatgcgttcgaattaatgggtggatatg |
25320704 |
T |
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| Q |
336 |
aaataagttatggcttatatcacgtagatatgaacgatccaagtttgaagagacaacctaaactctctgct |
406 |
Q |
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| T |
25320703 |
aaataagttatggcttatatcacgtagatatgaacgatccaagtttgaagagacaacctaaactctctgct |
25320633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 25321032 - 25320870
Alignment:
| Q |
1 |
ttcaggccaaaaaacatctagtaattcatcgttggatgattggtctagggtgaaatacttgcatgaatacattgggagcatggctaatgcactaaggtac |
100 |
Q |
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| T |
25321032 |
ttcaggccaaaaaacatttagtaattcatcgttggatgattggtctagggtgaaatacttgcatgaatacattgggagcatggctaatgcactaaggtac |
25320933 |
T |
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| Q |
101 |
ttctaattcgatttccaactataaagtttttattatatctatgatgttacaaaccttcatatt |
163 |
Q |
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| T |
25320932 |
ttctaattcgatttccaactataaagtttttattatatctatgatgttacaaaccttcatatt |
25320870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 25326782 - 25326661
Alignment:
| Q |
3 |
caggccaaaaaacatctagtaattcatcgttggatgattggtctagggtgaaatacttgcatgaatacattgggagcatggctaatgcactaaggtactt |
102 |
Q |
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| T |
25326782 |
caggccatagaacatttcgtaattcatccttgaatgattggtctagggtgaagtacttgcataaatacattgagaccatagctaatgaaataaggtactt |
25326683 |
T |
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| Q |
103 |
ctaattcgatttccaactataa |
124 |
Q |
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| T |
25326682 |
ctactttgattttcaaatataa |
25326661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 258 - 406
Target Start/End: Complemental strand, 25326588 - 25326440
Alignment:
| Q |
258 |
ttgaaaggagtggatcaaatgtcaaaggttattttgtatggtgcttattggatgcgttcgaattaatgggtggatatgaaataagttatggcttatatca |
357 |
Q |
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| T |
25326588 |
ttgaaaggagtggatcgaatataaaaggttattttgtatggtccttcatggatgtgcttgaaatactgagtggatatgaagaaagttttggtctatacta |
25326489 |
T |
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| Q |
358 |
cgtagatatgaacgatccaagtttgaagagacaacctaaactctctgct |
406 |
Q |
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| T |
25326488 |
catagatatgaaggatccaaacttgaagagacaacctaagctctctgct |
25326440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 399
Target Start/End: Complemental strand, 5216486 - 5216370
Alignment:
| Q |
283 |
aggttattttgtatggtgcttattggatgcgttcgaattaatgggtggatatgaaataagttatggcttatatcacgtagatatgaacgatccaagtttg |
382 |
Q |
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| T |
5216486 |
aggttactttgtatgggcctttttggatgtgtttgagttactaggtggatatgaagcaagttatggcttatattacatagatttggaagatccaaccttg |
5216387 |
T |
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| Q |
383 |
aagagacaacctaaact |
399 |
Q |
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| T |
5216386 |
aggaggcaacctaaact |
5216370 |
T |
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