View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15420_low_13 (Length: 313)
Name: NF15420_low_13
Description: NF15420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15420_low_13 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 34383290 - 34382978
Alignment:
| Q |
1 |
ccaaagtttcactaaactaggtaataaaaatcagtactccctccatttctcaatccttaatattttctccctcacatgcatagtatattgggatgctacc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34383290 |
ccaaagtttcactaaactagataataaaaatcagtactccctccatttctcaatccttaatattttctccctcacatgcatagtatattgggatgctacc |
34383191 |
T |
|
| Q |
101 |
aacttgttagttcataaatagtacgtttcagtgcacatgggagccaagactaagccattttgtatttaaattaaaaacagacttactttcaattgttctg |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34383190 |
aaattgttagttcataaatagtacgtttcagtgcacatgggagccaagactaagccattttgtatttaaattaaaaacagacttactttcaattgttctg |
34383091 |
T |
|
| Q |
201 |
tctacaatttttcaaattgtcaactttctcacacatttagcatgccactgtaccaaaaatttaatatgatttacactagatctcctagcatattattaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34383090 |
tctacaatttttcaaattgtcaactttctcacacatttagcatgccactgtaccaaaaatttaatatgatttacactagatctcctagcatattattaaa |
34382991 |
T |
|
| Q |
301 |
aaataatgagttt |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34382990 |
aaataatgagttt |
34382978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 206 - 313
Target Start/End: Complemental strand, 34368464 - 34368356
Alignment:
| Q |
206 |
aatttttcaaattgtcaactttctcacacatttagcatgccactgtaccaaaaatttaatatgatttacactagatctcctagcatattattaa-aaaat |
304 |
Q |
| |
|
|||||| ||||||| ||| || |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
34368464 |
aattttgcaaattgccaaattgctcacacattgagcgtgccactgtaccaaaaaattaatatgatttacactagatgtcctagcatattattaaaaaaat |
34368365 |
T |
|
| Q |
305 |
aatgagttt |
313 |
Q |
| |
|
||||||||| |
|
|
| T |
34368364 |
aatgagttt |
34368356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University