View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15420_low_15 (Length: 277)

Name: NF15420_low_15
Description: NF15420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15420_low_15
NF15420_low_15
[»] chr4 (4 HSPs)
chr4 (11-132)||(19658078-19658210)
chr4 (221-272)||(19657937-19657988)
chr4 (84-131)||(6409747-6409794)
chr4 (87-115)||(54199633-54199661)
[»] chr3 (4 HSPs)
chr3 (16-75)||(27741428-27741487)
chr3 (221-272)||(14993563-14993614)
chr3 (84-131)||(43275672-43275718)
chr3 (88-132)||(27741510-27741554)
[»] chr6 (2 HSPs)
chr6 (11-131)||(22577505-22577635)
chr6 (229-272)||(22577429-22577472)
[»] scaffold0009 (2 HSPs)
scaffold0009 (84-131)||(54194-54241)
scaffold0009 (19-80)||(54379-54440)
[»] chr5 (1 HSPs)
chr5 (84-131)||(7767372-7767418)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 19658210 - 19658078
Alignment:
Q  11 catagggcgttttgtgagtgtaattttgaggagcaattttcttgttgtatgatgttaccggggtt-----------tttgctgtttctttgggaggtgtg 99  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||           ||||||||||||||||||||||||    
T  19658210 catagggcgttttgtgagtgtaattttaaggagcaattttcttgttgtatgatgttaacggggtttttgggcggtttttgctgtttctttgggaggtgtg 19658111  T
Q  100 tttttggatgaaggtgcttgggagtgctaatga 132  Q
    | ||||||||||||||||||||||||| |||||    
T  19658110 tgtttggatgaaggtgcttgggagtgcaaatga 19658078  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 19657988 - 19657937
Alignment:
Q  221 agcagcggaatgtaattgtggaagttgtttttgtggttgcttgtgatgatgt 272  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  19657988 agcagcggaatgtaattgtggaagttgtttttgtggcagcttgtgatgatgt 19657937  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 6409794 - 6409747
Alignment:
Q  84 ttctttgggaggtgtgtttttggatgaaggtgcttgggagtgctaatg 131  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||    
T  6409794 ttctttgggaggtgtgtttttggatgaaggtgctcgggagagctaatg 6409747  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 54199661 - 54199633
Alignment:
Q  87 tttgggaggtgtgtttttggatgaaggtg 115  Q
    |||||||||||||||||||||||||||||    
T  54199661 tttgggaggtgtgtttttggatgaaggtg 54199633  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 27741428 - 27741487
Alignment:
Q  16 ggcgttttgtgagtgtaattttgaggagcaattttcttgttgtatgatgttaccggggtt 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27741428 ggcgttttgtgagtgtaattttgaggagcaattttcttgttgtatgatgttacctgggtt 27741487  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 14993614 - 14993563
Alignment:
Q  221 agcagcggaatgtaattgtggaagttgtttttgtggttgcttgtgatgatgt 272  Q
    |||||||||||||||| ||||||||||||||||||   ||||||||||||||    
T  14993614 agcagcggaatgtaatggtggaagttgtttttgtgacggcttgtgatgatgt 14993563  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 43275718 - 43275672
Alignment:
Q  84 ttctttgggaggtgtgtttttggatgaaggtgcttgggagtgctaatg 131  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||||    
T  43275718 ttctttgtgaggtgtgtttt-ggatgaaggtgcttgggagagctaatg 43275672  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 27741510 - 27741554
Alignment:
Q  88 ttgggaggtgtgtttttggatgaaggtgcttgggagtgctaatga 132  Q
    ||||||||||||||||||||||||| || |||||||  |||||||    
T  27741510 ttgggaggtgtgtttttggatgaagatgtttgggagaactaatga 27741554  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 22577635 - 22577505
Alignment:
Q  11 catagggcgttttgtgagtgtaattttgaggagcaattttcttgttgtatgatgttaccggggtttttg--ctgt--------ttctttgggaggtgtgt 100  Q
    |||||||||||||||||||  | |||| ||||| |||||||||||||| ||||||||||||||||||||  | ||        ||||||||||||||| |    
T  22577635 catagggcgttttgtgagttcattttttaggaggaattttcttgttgtttgatgttaccggggtttttggtcggtttttgctgttctttgggaggtgtat 22577536  T
Q  101 ttttggatgaaggtgcttgggagtgctaatg 131  Q
    ||||||||||||||| ||||||| |||||||    
T  22577535 ttttggatgaaggtgtttgggagagctaatg 22577505  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 22577472 - 22577429
Alignment:
Q  229 aatgtaattgtggaagttgtttttgtggttgcttgtgatgatgt 272  Q
    |||||||| || |||||||||||||||| |||||||||||||||    
T  22577472 aatgtaatggtcgaagttgtttttgtggctgcttgtgatgatgt 22577429  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 54241 - 54194
Alignment:
Q  84 ttctttgggaggtgtgtttttggatgaaggtgcttgggagtgctaatg 131  Q
    |||||||| | ||||||||||||||||||||||||||||| |||||||    
T  54241 ttctttggaaagtgtgtttttggatgaaggtgcttgggagagctaatg 54194  T

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Target: scaffold0009; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 54440 - 54379
Alignment:
Q  19 gttttgtgagtgtaattttgaggagcaattttcttgttgtatgatgttaccggggtttttgc 80  Q
    ||||||||  |||||| |||| |||||||||||||||||||| ||||||  || ||||||||    
T  54440 gttttgtggctgtaatattgaagagcaattttcttgttgtataatgttataggcgtttttgc 54379  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 7767372 - 7767418
Alignment:
Q  84 ttctttgggaggtgtgtttttggatgaaggtgcttgggagtgctaatg 131  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||||    
T  7767372 ttctttgtgaggtgtgtttt-ggatgaaggtgcttgggagagctaatg 7767418  T

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