View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15420_low_2 (Length: 612)

Name: NF15420_low_2
Description: NF15420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15420_low_2
NF15420_low_2
[»] chr8 (13 HSPs)
chr8 (18-612)||(9851022-9851616)
chr8 (18-603)||(2711208-2711790)
chr8 (18-511)||(3002021-3002513)
chr8 (18-612)||(3142088-3142682)
chr8 (18-522)||(2989027-2989528)
chr8 (18-410)||(3170192-3170584)
chr8 (18-597)||(2916053-2916629)
chr8 (18-323)||(2980115-2980420)
chr8 (435-525)||(13790970-13791060)
chr8 (341-612)||(2911376-2911644)
chr8 (449-526)||(3282851-3282928)
chr8 (548-612)||(3001956-3002020)
chr8 (154-237)||(13791255-13791338)
[»] chr7 (1 HSPs)
chr7 (18-612)||(3919074-3919668)
[»] scaffold0065 (2 HSPs)
scaffold0065 (18-612)||(45053-45647)
scaffold0065 (91-607)||(50227-50744)
[»] chr1 (1 HSPs)
chr1 (18-511)||(10755582-10756075)
[»] chr6 (1 HSPs)
chr6 (18-612)||(18355337-18355928)


Alignment Details
Target: chr8 (Bit Score: 551; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 18 - 612
Target Start/End: Original strand, 9851022 - 9851616
Alignment:
Q  18 caaagttttcagagacacatacccacatcctcttttcaaacaaatttttcacttccatgtcacaataaatcatttgagcaagagttgtctttcccaaacc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9851022 caaagttttcagagacacatacccacatcctcttttcaaacaaatttttcacttccatgtcacaataaatcatttgagcaagagttgtctttcccaaacc 9851121  T
Q  118 accaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttccgatgata 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  9851122 accaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaacaagcttataatcttcattttatcatcttctcttccaatgata 9851221  T
Q  218 tccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacatatctttca 317  Q
    |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9851222 tccgattccaacacaaaagaactagtctctctccttacacagttagtttgttgaaccaccacaacgtttgagtttagattcaacccagacatatctttta 9851321  T
Q  318 ctacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacctttgttac 417  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9851322 ctacatcattaaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacctttgttac 9851421  T
Q  418 tttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttgagcattctt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  9851422 tttgttcttatgagtttcatccattttgttcctcatatcttcaataacaaattcatctagcaaatcatctgcaggatgaagcacatctttgagccttctt 9851521  T
Q  518 acccaatttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacatctctaatagattcaaccgtgttcttaagcttttc 612  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9851522 acccaatttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacaactctaatagattcaaccgtgttcttaagcttttc 9851616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 18 - 603
Target Start/End: Original strand, 2711208 - 2711790
Alignment:
Q  18 caaagttttcagagacacatacccacatcctcttttcaaacaaatttttcacttccatgtcacaataaatcatttgagcaagagttgtctttcccaaacc 117  Q
    ||||||| || ||||||||||||||||| ||||||||||||||||||| |||||     |||   || | || ||||||||||| |||||||||||||||    
T  2711208 caaagttatccgagacacatacccacatactcttttcaaacaaattttgcacttgatcatcattgtataccaattgagcaagagctgtctttcccaaacc 2711307  T
Q  118 accaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttccgatgata 217  Q
    |||||  ||||||| ||||| ||| |||||||| ||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||| || ||     
T  2711308 accaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatc 2711407  T
Q  218 tccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacatatctttca 317  Q
    || ||||| ||||||||||||||| ||||||||||||||  ||||||||  | |||||||||||| || ||||| ||||||||| |||||||||||||||    
T  2711408 tctgattctaacacaaaagaactactttccctccttacatcattagttttcttaaccaccacaacattggagttaagattcaacacagacatatctttca 2711507  T
Q  318 ctacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacctttgttac 417  Q
    | |||||||| | || |||||||||||||||||||||||  ||||||||||||||||||| |  | || ||   ||||||||||||| |||||  || ||    
T  2711508 caacatcattaacacttttttgtattttttcaatctcatgagccattttacggcgaaaagcagctctgcttatggataaggaatgaaatacctgagtcac 2711607  T
Q  418 tttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttgagcattctt 517  Q
    |||||| ||||||| || |||| |||| |   ||||||||||||||||||| ||||||| ||| ||||| |||||| ||||||||||||||||| ||||     
T  2711608 tttgttgttatgagctttatcccttttatgtatcatatcttcaataagaaactcatctatcaaatcatcagcaggaagaagcacatctttgagccttcta 2711707  T
Q  518 acccaatttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacatctctaatagattcaaccgtgttctt 603  Q
    ||||| ||| | ||||||||| ||||    |||||||| ||||||||||||||||| ||| || | || |||||||| ||||||||    
T  2711708 acccagttttgtacagcatgactttg---ctcttgtttgtcttcagcatcaaggaggacagctttgatggattcaactgtgttctt 2711790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 18 - 511
Target Start/End: Complemental strand, 3002513 - 3002021
Alignment:
Q  18 caaagttttcagagacacatacccacatcctcttttcaaacaaatttttcacttccatgtcacaataaatcatttgagcaagagttgtctttcccaaacc 117  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||    |||  ||| | ||  |||||||||||||||||||| |||||    
T  3002513 caaagttttcagagacacatacccacatacttatttcaaacaaattttgcacttctccatcattatataccaactgagcaagagttgtctttcctaaacc 3002414  T
Q  118 accaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttccgatgata 217  Q
    |||||  ||||||| ||||||||| ||||||||||| ||| |||||||||||||||| | |  |||||||| | ||||||| ||||||||||| ||||||    
T  3002413 accaatcccaacaatagcaatcaaggagacattttggtttccatgtggttgtctcaaaaggtgtataatctcctttttatcgtcttctcttccaatgata 3002314  T
Q  218 tccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacatatctttca 317  Q
    |||||||| ||||| ||||||||||||||||||| ||||   | | |||||| |||||||||||| |||| |||||||||| ||||||||||||||||||    
T  3002313 tccgattctaacaccaaagaactagtttccctccctacattgtaattttgttcaaccaccacaacatttgggtttagattc-acccagacatatctttca 3002215  T
Q  318 ctacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacctttgttac 417  Q
    | |||||||| |||| ||||||||||||||||||||||   ||||||||| ||| ||||| |  | || || |||| |||||||||| ||||| ||| ||    
T  3002214 caacatcattaaaacttttttgtattttttcaatctcaagagccattttatggcaaaaagcagctctgcttagagagaaggaatgaaatacctgtgtcac 3002115  T
Q  418 tttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttgagc 511  Q
    ||||||||||| || || |||| ||||||   ||||||||||||||||||| ||||||| ||| ||| | |||||| ||||||| |||||||||    
T  3002114 tttgttcttatcagctttatcccttttgtgtatcatatcttcaataagaaactcatctatcaaatcaacagcaggaagaagcacgtctttgagc 3002021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 18 - 612
Target Start/End: Original strand, 3142088 - 3142682
Alignment:
Q  18 caaagttttcagagacacatacccacatcctcttttcaaacaaatttttcacttccatgtcacaataaatcatttgagcaagagttgtctttcccaaacc 117  Q
    ||||||| ||||||||||| |||||||| | |||||||||  ||||| | |||||    |||   || | || ||||| ||||| |||||||||||||||    
T  3142088 caaagttatcagagacacaaacccacatacacttttcaaaataatttgttacttcaccatcattgtataccaattgagaaagagctgtctttcccaaacc 3142187  T
Q  118 accaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttccgatgata 217  Q
    |||||  ||||||| ||||| || |||||||  |||||||||||||| ||| ||||| | ||||| ||| |   |||||||||| |||||||| ||||||    
T  3142188 accaatcccaacaatagcaaccacagagacacgttgattttcatgtgattgcctcaacatgcttacaatgtcatttttatcatcatctcttccaatgata 3142287  T
Q  218 tccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacatatctttca 317  Q
    || || || ||||||||||||||  |||| ||||| |||| ||||||||| |||||||||||||| || | ||||||||||||| |||||||||||||||    
T  3142288 tctgactctaacacaaaagaacttttttctctcctaacactattagtttgctgaaccaccacaacattcgggtttagattcaacacagacatatctttca 3142387  T
Q  318 ctacatcattgaaacct-ttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacctttgtta 416  Q
    | |||||||| |||| | |||||||| ||||||| |||||| ||||||||||||| ||||| |||| | || |||||||| |||||||| |||| |||||    
T  3142388 ccacatcatt-aaacttcttttgtatcttttcaacctcataagccattttacggctaaaagcaattctattcggagataaagaatgaagcacctgtgtta 3142486  T
Q  417 ctttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagca---catctttgagcat 513  Q
    ||||||||||| ||| |||||||  ||| |  ||||| ||||| |||  ||||||||||||||||||||| ||||||||||| |   ||||||||||  |    
T  3142487 ctttgttcttacgagcttcatcccgtttttgtctcatgtcttcgatagcaaattcatctagcaagtcatcagcaggatgaagtacatcatctttgagtct 3142586  T
Q  514 tcttacccaatttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacatctctaatagattcaaccgtgttcttaagcttttc 612  Q
    ||||| |||  || | ||||||||| |||     |||||||| ||||||||||||||||||||| || | || |||||||| ||||| |||||| ||||    
T  3142587 tcttatccagatttgtacagcatgacttt---tctcttgtttgtcttcagcatcaaggagcacagctttgatggattcaactgtgtttttaagcctttc 3142682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 18 - 522
Target Start/End: Complemental strand, 2989528 - 2989027
Alignment:
Q  18 caaagttttcagagacacatacccacatcctcttttcaaacaaatttttcacttccatgtcacaataaatcatttgagcaagagttgtctttcccaaacc 117  Q
    ||||||| || |||||||||||||||||   ||||||||||||||||||||||||    ||    || | || ||||||||||| |||||||||||||||    
T  2989528 caaagttatccgagacacatacccacatatgcttttcaaacaaatttttcacttcaccatctttgtataccagttgagcaagagctgtctttcccaaacc 2989429  T
Q  118 accaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttccgatgata 217  Q
    |||||  ||||||| ||||| ||| |||||||| |||| |||||||| ||| ||||| |||||||||||| |  ||| ||| ||||||||||| |||||     
T  2989428 accaataccaacaatagcaaccaatgagacattctgatgttcatgtgattgcctcaacaagcttataatcgtgttttgatcttcttctcttccaatgatc 2989329  T
Q  218 tccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacatatctttca 317  Q
    || ||||| |||||| |||| | ||||||||||||||||   |||||||    |||||||||||| ||   ||| || |||||   ||||||||||| |     
T  2989328 tcagattctaacacataagagcaagtttccctccttacattgttagttttcgcaaccaccacaacatt---gttaagtttcaaataagacatatcttcct 2989232  T
Q  318 ctacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacctttgttac 417  Q
    | ||||| || |||| | |||||||||||||||||||||  ||||||||||||||||||| | || || ||||  | |||||||||| ||||| ||| ||    
T  2989231 caacatctttaaaacttctttgtattttttcaatctcatgagccattttacggcgaaaagcagttctgcttggtaagaaggaatgaattacctgtgtcac 2989132  T
Q  418 tttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttgagcattctt 517  Q
    |||||||||||||| || ||||  |||||   ||||||||||||||||||| ||||||| ||| |||||||||||| ||||||| ||||||||| |||||    
T  2989131 tttgttcttatgagctttatcccgtttgtgtatcatatcttcaataagaaactcatctatcaaatcatctgcaggaagaagcacgtctttgagccttctt 2989032  T
Q  518 accca 522  Q
    |||||    
T  2989031 accca 2989027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 3170192 - 3170584
Alignment:
Q  18 caaagttttcagagacacatacccacatcctcttttcaaacaaatttttcacttccatgtcacaataaatcatttgagcaagagttgtctttcccaaacc 117  Q
    ||||||| ||||||||||||||||||||||||||||||||  | ||| | ||||     |||   || | || ||||||||||| |||||||||||||||    
T  3170192 caaagttatcagagacacatacccacatcctcttttcaaaagactttgttacttgagcatcattgtataccaattgagcaagagctgtctttcccaaacc 3170291  T
Q  118 accaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttccgatgata 217  Q
    |||||  ||||||| ||||| ||| |||||||| ||||||||||||| ||| ||||| |||||||| |||||| ||||||||||||||||||| |||||     
T  3170292 accaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttatgatcttctttttatcatcttctcttccaatgatc 3170391  T
Q  218 tccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacatatctttca 317  Q
    || ||||| |||||||||||||| |||||||||||||||   | | |||| | |||||||||||| |||||||||||||||||||||| |||||||||||    
T  3170392 tctgattctaacacaaaagaacttgtttccctccttacaatgtcactttgctcaaccaccacaacatttgagtttagattcaacccaggcatatctttca 3170491  T
Q  318 ctacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacct 410  Q
    | || ||||| ||     |||||| ||||||||||||||  ||||||||||||| ||||| |||| | ||||||||||||  |||||||||||    
T  3170492 ccacgtcattaaatttggtttgtaatttttcaatctcatgagccattttacggctaaaagcaattctatttggagataagcgatgaagtacct 3170584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 18 - 597
Target Start/End: Original strand, 2916053 - 2916629
Alignment:
Q  18 caaagttttcagagacacatacccacatcctcttttcaaacaaatttttcacttccatgtcacaataaatcatttgagcaagagttgtctttcccaaacc 117  Q
    |||||| |||||| ||||||||||| ||| |||||||||||   |||| |||||||   |||  ||| | || ||||||||||| |||||| || |||||    
T  2916053 caaagtcttcagacacacatacccatatcttcttttcaaactttttttgcacttccccatcattatataccagttgagcaagagctgtcttacctaaacc 2916152  T
Q  118 accaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttccgatgata 217  Q
     ||||  |||||||  |||||||| |||||||| || |||  ||||||||| ||||| ||  ||| |||||   |||||| ||||||||| || ||||||    
T  2916153 gccaataccaacaatggcaatcaaggagacattgtggtttctatgtggttgcctcaataaatttacaatctcttttttattatcttctctaccaatgata 2916252  T
Q  218 tccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacatatctttca 317  Q
    || ||||| || |||||||| | |||||| |||||||||   | | |||| |  ||||||||||| |||  | | | |||||||  || ||| || | ||    
T  2916253 tctgattctaatacaaaagagcaagtttctctccttacatcgtcactttgcttcaccaccacaacattttggctcaaattcaacttagtcatttcatcca 2916352  T
Q  318 ctacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacctttgttac 417  Q
    |||||||||| ||   ||||  |||||||||||||||    ||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||  ||    
T  2916353 ctacatcattaaatatttttcttattttttcaatctctcgagccattttacggcgaaaagcaattttttttggagataaggaatgcaatacctttgacac 2916452  T
Q  418 tttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttgagcattctt 517  Q
    ||||||||| | |  | | | |||| |||  | |||  ||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||  ||||     
T  2916453 tttgttcttcttacgtgctttcattctgtgtcgcatgccttcaataacaaattcatctagcaagtcatcagcaggatgaagcacatcattgagtcttcta 2916552  T
Q  518 acccaatttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacatctctaatagattcaaccgt 597  Q
    | ||| ||| | |||||||| |||||   |||||||||||| |||||||||||||||||| || | || |||||||||||    
T  2916553 atccagttttgtacagcatggttttg---ttcttgtttctcctcagcatcaaggagcacagctttgatggattcaaccgt 2916629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 2980420 - 2980115
Alignment:
Q  18 caaagttttcagagacacatacccacatcctcttttcaaacaaatttttcacttccatgtcacaataaatcatttgagcaagagttgtctttcccaaacc 117  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| | ||||||    ||    || | || |||||||||||  ||||||||||||||    
T  2980420 caaagttatcagagacacatacccacattctcttttcaaacaaattctgcacttcttcatcgttgtataccaattgagcaagagccgtctttcccaaacc 2980321  T
Q  118 accaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttccgatgata 217  Q
    |||||  ||||||| ||||| || ||| || | |||||||||||||| ||| ||||| ||||||||||||||  ||||||||||||||||||| ||||||    
T  2980320 accaataccaacaatagcaaccacagaaacttgttgattttcatgtgattgcctcaacaagcttataatcttgtttttatcatcttctcttccaatgata 2980221  T
Q  218 tccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacatatctttca 317  Q
    |  ||||| |||||| |||||| ||||||||||||||||   |||| ||  | |||||||||||| || ||||| ||||||||| |||||||||||||||    
T  2980220 tttgattctaacacataagaacaagtttccctccttacattgttagctttctcaaccaccacaacattggagttaagattcaacacagacatatctttca 2980121  T
Q  318 ctacat 323  Q
    | ||||    
T  2980120 caacat 2980115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 435 - 525
Target Start/End: Complemental strand, 13791060 - 13790970
Alignment:
Q  435 catccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttgagcattcttacccaatt 525  Q
    |||||| |||||  |||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||| |||||| ||||||    
T  13791060 catccactttgtatctcataccttcaataataaattcatctagcaagtcatctgcaagatgaagcacatctgtgagccttcttatccaatt 13790970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 341 - 612
Target Start/End: Original strand, 2911376 - 2911644
Alignment:
Q  341 attttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacctttgttactttgttcttatgagtttcatcca 440  Q
    ||||||||||| ||||  ||||| |||  ||| |||| ||||  |||||| |||||||||| || |||||| || ||||| ||||| |||  | |||||     
T  2911376 attttttcaatttcatgagccatcttatagcggaaagcaattcggtttggtgataaggaataaaataccttagtcactttcttcttctgacgtacatccg 2911475  T
Q  441 ttttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttgagcattcttacccaatttcgaacagcatgatt 540  Q
     |||||  |||| ||||||||||| |||||||||||||||||  || |||  ||  ||||||||||||||  |||| | ||| |||   |||||||| ||    
T  2911476 atttgtgtctcaaatcttcaataacaaattcatctagcaagttgtcagcaaaattcagcacatctttgagtcttctaatccagttttttacagcatggtt 2911575  T
Q  541 ttgtgcttcttgtttctcttcagcatcaaggagcacatctctaatagattcaaccgtgttcttaagcttttc 612  Q
    |||   ||||||||| || |||||||||||||| |||| ||| ||||| ||||| || ||||||||| ||||    
T  2911576 ttg---ttcttgtttgtcctcagcatcaaggagtacatttctgatagactcaactgtattcttaagcctttc 2911644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 449 - 526
Target Start/End: Original strand, 3282851 - 3282928
Alignment:
Q  449 ctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttgagcattcttacccaattt 526  Q
    |||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||| ||| || |||||||    
T  3282851 ctcataccttcaataatgaattcatctagcaagtcatctgcaagatgaagcacatctttgagccttcctatccaattt 3282928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 548 - 612
Target Start/End: Complemental strand, 3002020 - 3001956
Alignment:
Q  548 tcttgtttctcttcagcatcaaggagcacatctctaatagattcaaccgtgttcttaagcttttc 612  Q
    |||||||| ||||||||||||||||||||| || | || |||||||| |||||||||||| ||||    
T  3002020 tcttgtttgtcttcagcatcaaggagcacagctttgatggattcaactgtgttcttaagcctttc 3001956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 13791338 - 13791255
Alignment:
Q  154 attttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttccgatgatatccgattccaacacaaaaga 237  Q
    |||| ||||||||||| ||||||   ||||||||| | ||||||||||||||||||| ||||| |  ||||| |||| ||||||    
T  13791338 atttccatgtggttgtgtcaagagatttataatctcctttttatcatcttctcttcccatgatgtttgattctaacaaaaaaga 13791255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 612
Target Start/End: Original strand, 3919074 - 3919668
Alignment:
Q  18 caaagttttcagagacacatacccacatcctcttttcaaacaaatttttcacttccatgtcacaataaatcatttgagcaagagttgtctttcccaaacc 117  Q
    ||||||| || ||||||||||||||||| ||| |||||||| | |||| ||||||||  |||   || |||| ||||||||||||||||||||| |||||    
T  3919074 caaagttatcggagacacatacccacatactcctttcaaacgagttttgcacttccacatcattgtatatcaattgagcaagagttgtctttcctaaacc 3919173  T
Q  118 accaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttccgatgata 217  Q
    |||||  ||||||| | ||| || | |||||||||||||| ||||||||||  |||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  3919174 accaatcccaacaataccaaccacaaagacattttgatttccatgtggttgcatcaacaagcttataatcttctttttatcatcttctcttccaatgata 3919273  T
Q  218 tccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacatatctttca 317  Q
    |||||||| ||| |||| ||||| ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  3919274 tccgattctaacgcaaatgaacttgtttccctccttacactcttagtttgttgaaccaccacaacatttgagtttagattcaacccagacatatcattca 3919373  T
Q  318 ctacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacctttgttac 417  Q
    | |||||||| ||   | |||||| ||||||||||||||  ||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||    
T  3919374 ccacatcattaaattttgtttgtagtttttcaatctcatgagccattttacggcgaaaagcaaatctgtttggagataaggaatgaagtacctttgttac 3919473  T
Q  418 tttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagca---catctttgagcatt 514  Q
    ||||||||||| || ||| || |||||||  |||||||| | ||||| ||||||||| ||||||||||| |||||||||||||   ||||||||||| ||    
T  3919474 tttgttcttatcagcttcctcaattttgtgtctcatatcgtgaataacaaattcatcgagcaagtcatcagcaggatgaagcacatcatctttgagcctt 3919573  T
Q  515 cttacccaatttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacatctctaatagattcaaccgtgttcttaagcttttc 612  Q
    |||| ||| ||| | ||| ||||||||||   || ||||||||| || ||||||||||||||| |||| || |||| ||| ||  |||||||| ||||    
T  3919574 cttatccagttttgcacaccatgattttg---ttgttgtttctcctcggcatcaaggagcacagctctgatggattgaactgtactcttaagcctttc 3919668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 612
Target Start/End: Complemental strand, 45647 - 45053
Alignment:
Q  18 caaagttttcagagacacatacccacatcctcttttcaaacaaatttttcacttccatgtcacaataaatcatttgagcaagagttgtctttcccaaacc 117  Q
    ||||||| | ||||||||||||||||||||||||||||||  | ||| | |||||    |||   || | || ||||||||||| |||||||||||||||    
T  45647 caaagttattagagacacatacccacatcctcttttcaaaagactttgttacttcaccatcattgtataccaattgagcaagagctgtctttcccaaacc 45548  T
Q  118 accaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttccgatgata 217  Q
     ||||  || |||| ||||| ||| |||||||| ||||||||||||| ||| ||||| |||||||| |||||  || |||||||||||||||||||||||    
T  45547 gccaatccctacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttatgatcttatttctatcatcttctcttccgatgata 45448  T
Q  218 tccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacatatctttca 317  Q
    || |||||  ||||||||||||| |||||||||||||||   | | |||| | |||||||||||| ||||||||||||||||||||||||||||||||||    
T  45447 tctgattctgacacaaaagaacttgtttccctccttacaatgtcactttgctcaaccaccacaacatttgagtttagattcaacccagacatatctttca 45348  T
Q  318 ctacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacctttgttac 417  Q
    | || ||||| ||   | |||||||||||||||||||||  ||||||||||||| ||||| |||| | ||||||||||||  ||||||||||| ||| ||    
T  45347 ccacgtcattaaattttgtttgtattttttcaatctcatgagccattttacggctaaaagcaattctatttggagataagcgatgaagtacctgtgtcac 45248  T
Q  418 tttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatc---tttgagcatt 514  Q
    |||||||||  ||| |||||||  |||||  ||||| |||||||||  ||||||||||||||| ||||| |||||||||||||||||   ||||||  ||    
T  45247 tttgttcttgcgagcttcatcccgtttgtgtctcatgtcttcaatagaaaattcatctagcaaatcatcagcaggatgaagcacatcatctttgagtctt 45148  T
Q  515 cttacccaatttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacatctctaatagattcaaccgtgttcttaagcttttc 612  Q
    |||| ||| ||| | ||| ||||| |||||   | ||||||||| |||||||||||||||||| |||| |  |||||||| || ||||||||| ||||    
T  45147 cttatccagttttgcacaccatgactttgt---tgttgtttctcctcagcatcaaggagcacagctctgacggattcaacagtattcttaagcctttc 45053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 91 - 607
Target Start/End: Complemental strand, 50744 - 50227
Alignment:
Q  91 ttgagcaagagttgtctttcccaaaccaccaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttc 190  Q
    ||||||||||||||||||||||||||||||||  ||||||| ||||| || ||| ||||  || |||||||||||||  ||||| ||||||| ||||| |    
T  50744 ttgagcaagagttgtctttcccaaaccaccaatcccaacaatagcaaccacagaaacatgctggttttcatgtggttacctcaacaagcttaaaatct-c 50646  T
Q  191 atttta-tcatcttctcttccgatgatatccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccaca--acgtttg 287  Q
    |||||| || |||||||||||||||||||| ||||| ||||||||||||||| ||||| || |||||   ||| |||| |  |||||||||  |  ||||    
T  50645 attttaatcgtcttctcttccgatgatatcagattcgaacacaaaagaactattttccttctttacaatgttactttgctccaccaccacacaatatttg 50546  T
Q  288 agtttagattcaacccagacatatctttcactacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtt 387  Q
     |||||||||||||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||  ||||||||| ||||||||| |||| ||||    
T  50545 tgtttagattcaacccagacatatctttcaccacatcatt-aaatttttttgtattttttcaatctcatgagccattttaaggcgaaaagcaattctgtt 50447  T
Q  388 tggagataaggaatgaagtacctttgttactttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatct 487  Q
    ||||||||| ||||||||||||| | | | ||| |||||| ||| ||||||   |||||  |||| ||||||||||||||||| |||||||||||||||     
T  50446 tggagataaagaatgaagtacctgtctcagttttttcttacgagcttcatctcgtttgtgtctcaaatcttcaataagaaatttatctagcaagtcatca 50347  T
Q  488 gcaggatgaagca---catctttgagcattcttacccaatttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacatctctaa 584  Q
    ||||||||||| |   ||||||||||  |||||| |||  || | ||||||| | ||||    |||||||||||||||||||| ||||||||| |||  |    
T  50346 gcaggatgaagtacatcatctttgagtcttcttatccagatttgtacagcattactttg---ctcttgtttctcttcagcatcgaggagcacagctcaga 50250  T
Q  585 tagattcaaccgtgttcttaagc 607  Q
      |||||||| || |||||||||    
T  50249 cggattcaacagtattcttaagc 50227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 198; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 18 - 511
Target Start/End: Original strand, 10755582 - 10756075
Alignment:
Q  18 caaagttttcagagacacatacccacatcctcttttcaaacaaatttttcacttccatgtcacaataaatcatttgagcaagagttgtctttcccaaacc 117  Q
    ||||||| |||||||||||||||||||| ||||| |||||||||| || ||||||  | ||    || | || |||||||||||  ||||| || |||||    
T  10755582 caaagttatcagagacacatacccacatactcttctcaaacaaatcttgcacttctctatcgttgtataccaattgagcaagagccgtcttccctaaacc 10755681  T
Q  118 accaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttccgatgata 217  Q
    |||||  ||||||| ||||| ||| |||||||| ||||||||||||| |||  |||| || |||||||| ||| ||||||||| ||||||||| ||||||    
T  10755682 accaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcatcaacaaacttataattttctttttatcatattctcttccaatgata 10755781  T
Q  218 tccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacatatctttca 317  Q
    |  ||||| ||||||||||||||||||||||||||||||   |||||||  | |||||| ||||| |||||||| |||||||||||||||||||||||||    
T  10755782 tttgattctaacacaaaagaactagtttccctccttacatcgttagttttctcaaccactacaacatttgagttaagattcaacccagacatatctttca 10755881  T
Q  318 ctacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacctttgttac 417  Q
    | |||||||| ||||||||||||||||||||||||||    ||||||||||| | ||||  |  |||| ||  ||| || ||||||||||||||||||||    
T  10755882 ccacatcattaaaacctttttgtattttttcaatctctagagccattttacgacaaaaaacagctttgcttaaagagaaagaatgaagtacctttgttac 10755981  T
Q  418 tttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttgagc 511  Q
    |||||||||||||| ||||||| |||||    ||||||||||||||||||||||||||| ||| |||||||||| |  ||||||||||||||||    
T  10755982 tttgttcttatgagcttcatcccttttgcgtatcatatcttcaataagaaattcatctatcaaatcatctgcagcaacaagcacatctttgagc 10756075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 612
Target Start/End: Complemental strand, 18355928 - 18355337
Alignment:
Q  18 caaagttttcagagacacatacccacatcctcttttcaaacaaatttttcacttccatgtcacaataaatcatttgagcaagagttgtctttcccaaacc 117  Q
    ||||||| || |||||||||||||||||   ||||||||||||||||||||||||    ||    || | || ||||||||||| |||||||||||||||    
T  18355928 caaagttatctgagacacatacccacatatgcttttcaaacaaatttttcacttcaccatctttgtataccagttgagcaagagctgtctttcccaaacc 18355829  T
Q  118 accaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaagaagcttataatcttcattttatcatcttctcttccgatgata 217  Q
    |||||  ||||||| ||||| ||| |||||||| |||| |||||||| ||| ||||| ||||||||||||||  ||||||| ||||||||||| |||||     
T  18355828 accaataccaacaatagcaaccaatgagacattctgatgttcatgtgattgcctcaacaagcttataatcttgtttttatcttcttctcttccaatgatc 18355729  T
Q  218 tccgattccaacacaaaagaactagtttccctccttacacaattagtttgttgaaccaccacaacgtttgagtttagattcaacccagacatatctttca 317  Q
    || ||||| |||||| |||| | ||||||||||||||||   |||||||    |||||||||||| || ||||| || |||||   |||||||||||||     
T  18355728 tcagattctaacacataagagcaagtttccctccttacattgttagttttcgcaaccaccacaacattggagttaagtttcaaataagacatatctttct 18355629  T
Q  318 ctacatcattgaaacctttttgtattttttcaatctcatatgccattttacggcgaaaagaaattttgtttggagataaggaatgaagtacctttgttac 417  Q
    | ||||| || |||| | |||||||||||||||||||||  ||||||||||||||||||| | || || |||| || |||||||||| ||||| | | ||    
T  18355628 caacatctttaaaacttctttgtattttttcaatctcatgagccattttacggcgaaaagcagttctgcttggtgagaaggaatgaaatacctgtttcac 18355529  T
Q  418 tttgttcttatgagtttcatccattttgttcctcatatcttcaataagaaattcatctagcaagtcatctgcaggatgaagcacatctttgagcattctt 517  Q
    |||||||||||||| || |||| ||||||   ||||||||||||||| ||||||||||| ||| |||||||||||| ||||||  || |||||| ||||     
T  18355528 tttgttcttatgagctttatcccttttgtgtatcatatcttcaataaaaaattcatctatcaaatcatctgcaggaagaagcaggtcgttgagccttcta 18355429  T
Q  518 acccaatttcgaacagcatgattttgtgcttcttgtttctcttcagcatcaaggagcacatctctaatagattcaaccgtgttcttaagcttttc 612  Q
    |||||   | | ||||||||| ||||    |||||||| ||||||||||||||||||||| || | || |||||||| || ||||||||| ||||    
T  18355428 acccagagttgtacagcatgactttg---ctcttgtttgtcttcagcatcaaggagcacagctttgatggattcaactgtcttcttaagcctttc 18355337  T

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