View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15420_low_3 (Length: 586)
Name: NF15420_low_3
Description: NF15420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15420_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 34383011 - 34382689
Alignment:
| Q |
1 |
atctccaagaatattattaaaaaataatgagtttactgaaacattgttcgacttgattatcaagtgattatcaaatcatgtttcatttaatttaatgatg |
100 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34383011 |
atctcctagcatattattaaaaaataatgagtttactgaaacattgttcgacttgattatcaagtgattatcaaatcatgtttcatttaatttaatgatg |
34382912 |
T |
|
| Q |
101 |
agatttattgaacagaaacaatcttatctattgtgcaagatttatcttcctaatgcaccatagacttgatcatattaatattgagtttttcgttgagtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34382911 |
agatttattgaacagaaacaatcttatctattgtgcaagatttatcttcctaatgcaccatagacttgatcatattaatattgagtttttcgttgagtag |
34382812 |
T |
|
| Q |
201 |
aatcaaatagttcttaatacccccacaattatcgttatagatgaaccaataaaaaactcttaactaaccacttaagtactaaaaaatatagttataccct |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34382811 |
aatcaaatagttcttaata-ccccacaattatcgttatagatgaaccaataaaaaactcttaactaaccacttaagtactaaaaaatatagttataccct |
34382713 |
T |
|
| Q |
301 |
tttcaatgctcaaagagattcgac |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
34382712 |
tttcaatgctcaaagagattcgac |
34382689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 372 - 568
Target Start/End: Complemental strand, 34382641 - 34382445
Alignment:
| Q |
372 |
caagcaatacatctcaatttgtctatctaagagagctaatttgataaagggaagcaaaatgtaaacatagagagctacacatttatctcctaatccatta |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34382641 |
caagcaatacatctcaatttgtctatctaagagagctaatttgataaagggaagcaaaatgtaaacatagagagctacacatttatctcctaatccatta |
34382542 |
T |
|
| Q |
472 |
actatctctaacagcttttctcacattttgagtttcatgtcaatctgtctttcttctttaccggttcctttttccaatttttacatatgtttcaagt |
568 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
34382541 |
actatctctaacagcttttctcacattttgagtttcatgtcaatctgtctttcttctttactggttcctttttccaatttttacatatgttttaagt |
34382445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 91 - 286
Target Start/End: Complemental strand, 34366812 - 34366617
Alignment:
| Q |
91 |
tttaatgatgagatttattgaacagaaacaatcttatctattgtgcaagatttatcttcctaatgcaccatagacttgatcatattaatattgagttttt |
190 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||| ||| ||| ||||||||| ||| || |||| |||||||||||||||||||||||||||||||| |
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| T |
34366812 |
tttaatgatgagatttattgaactgaaacaatgttatatatagtgtaagatttattttc-tagtgcatcatagacttgatcatattaatattgagttttt |
34366714 |
T |
|
| Q |
191 |
cgttgagtagaatcaaatagttcttaatacccccacaattatcgttatagatgaaccaat--aaaaaactcttaactaaccacttaagtactaaaaaa |
286 |
Q |
| |
|
||||||||||||||| | ||||||||| || ||||||| | ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
34366713 |
tattgagtagaatcaaaaaattcttaata-cctcacaattgtagttatagatgaaccaataaaaaaaactcttaacgaaccacttaagtactaaaaaa |
34366617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 419 - 546
Target Start/End: Complemental strand, 34368076 - 34367951
Alignment:
| Q |
419 |
agggaagcaaaatgtaaacatagagagctacacatttatctcctaatccattaactatctctaacagcttttctcacattttgagtttcatgtcaatctg |
518 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||||| || |||||||||||| ||||||||||| |||||||||| ||||||||||||||||| || |
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| T |
34368076 |
agggaagcaaaatgtaaacaaagagagctgcacatttatatcttaatccattaaccatctctaacaggttttctcaca--ttgagtttcatgtcaatttg |
34367979 |
T |
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| Q |
519 |
tctttcttctttaccggttcctttttcc |
546 |
Q |
| |
|
|||||||||||||| | ||||||||||| |
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| T |
34367978 |
tctttcttctttactgtttcctttttcc |
34367951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 34368380 - 34368306
Alignment:
| Q |
11 |
atattattaaaaaa-taatgagtttactgaaacattgttcgacttga-----ttatcaagtgattatcaaatcat |
79 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||| |||| | ||||||||||||||||||||| |
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| T |
34368380 |
atattattaaaaaaataatgagtttactgaaacactgttcgatttgaactagtcatcaagtgattatcaaatcat |
34368306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 45806890 - 45806931
Alignment:
| Q |
70 |
atcaaatcatgtttcatttaatttaatgatgagatttattga |
111 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
45806890 |
atcacatcatgttttatttaatttaatgatgagatttattga |
45806931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 111
Target Start/End: Complemental strand, 19514028 - 19513998
Alignment:
| Q |
81 |
tttcatttaatttaatgatgagatttattga |
111 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
19514028 |
tttcatttaatttaatgatgagatttattga |
19513998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 6863123 - 6863087
Alignment:
| Q |
75 |
atcatgtttcatttaatttaatgatgagatttattga |
111 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||||| |
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| T |
6863123 |
atcatatttcatttaatttaatggtgagatttattga |
6863087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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