View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15420_low_6 (Length: 531)
Name: NF15420_low_6
Description: NF15420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15420_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Original strand, 42942552 - 42943045
Alignment:
| Q |
19 |
gttagttgtttgtacttattattgggaactgatacatctacataggaacaatatttttcgttttacactccaaatctataattagatataaaagtttgtt |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42942552 |
gttagttgtt-gtacttattattgggaactgatacatctacataggaacaatatttttcgttttacactccaaatctataattagatataaaagtttgtt |
42942650 |
T |
|
| Q |
119 |
cgtagcttttgtgactttgaagcttataggaatcattatatataattttctaatgccaaatatattcatatcattttttaaagaaattttgaaatagaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42942651 |
cgtagcttttgtgactttgaagcttataggaatcattatatatagttttctaatgccaaatatattcatatcattttttaaagaaattttgaaatagaaa |
42942750 |
T |
|
| Q |
219 |
atacatacaattgtctaatcaatttcaaaatttaaaatggatattggtatttgcacatttgttttactcttattaatggcttcatcttctaggtctcaaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42942751 |
atacatacaattgtctaatcaatttcaaaatttaaaatggatattggtatttgcacatttgttttgctcttattaatggcttcatcttctaggtctcaaa |
42942850 |
T |
|
| Q |
319 |
gtgtagttttggatgtcaccaagcatgctacaatatctgagggagaaataaccgaggtgatgagagtatacactaaaattaaaaaacttaaacatgaatt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42942851 |
gtgtagttttggatgtcaccaagcatgctacaatatctgtgggagaaataaccgaggtgatgagagtatacactaaaattaaaaaacttaaacatgattt |
42942950 |
T |
|
| Q |
419 |
tannnnnnnnnnnnacattatcttgtaacacaagtaacaattgtttttcgaattttggttattctctcatttcctttcacttcataagattgtgtgtttc |
518 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42942951 |
ta---tttatttttacattatcttgtaacac----aacaattgtttttcgaattttggttattctctcatttcctttcacttcataagattgtgtgtttc |
42943043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University