View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15420_low_7 (Length: 520)
Name: NF15420_low_7
Description: NF15420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15420_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 146 - 511
Target Start/End: Complemental strand, 46577202 - 46576837
Alignment:
| Q |
146 |
gtggtttagtaaaattgattttaggtaaaagtgaatttaatgtaaaattttcaaggcaaaagctacatatcctaccttaatcctaaaatcaattatggag |
245 |
Q |
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| T |
46577202 |
gtggtttagtaaaattgattttaggtaaaagtgaatttaatgtaaaattttcaaggcaaaagctacatatcctaccttaatcctaaaatcaattatggag |
46577103 |
T |
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| Q |
246 |
taaaagacgattctattagggagccatcaaacactaaaaccagtatcaagtcttaataatcactttttgctctcttaaaattgaatccaaccatgcactt |
345 |
Q |
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| T |
46577102 |
taaaagacgattctattacggagccatctaacactaaaaccagtatcaagtcttaataatcactttttggtctcttaaaattgaatccaaccatgcactt |
46577003 |
T |
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| Q |
346 |
ggattttacttgtcatgtgttgtaagatgtgtgtgattttgaatttatatgttttaatgctctcaatattatgctcataatttggaatcgttttatataa |
445 |
Q |
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| T |
46577002 |
ggattttacttgtcatgtgttgtaagatgtgtgtgattttgaatttatatgttttcatgctctcaatattatgctcataatttggaatcgttttatatgg |
46576903 |
T |
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| Q |
446 |
acatgatccatttattgtaacnnnnnnnnnnngtttttcctttccatttttctagtctgatgatgt |
511 |
Q |
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| T |
46576902 |
acatgatccatttattgtaacaaaaaataaatgtttttcctttccatttttccagtcttatgatgt |
46576837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 46577303 - 46577201
Alignment:
| Q |
18 |
atattttctcgggtactatctatagtagagaattacttgcaagaggttgtgagcttctgaagcgcacacgcaaaggtatatttcttattgtgtgtttgga |
117 |
Q |
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| T |
46577303 |
atattttctcgggtactatctatagtagagaattacttgcaagaggttgtgagcttctgaagcgcacacgcaaaggtatatttcttattgtgtgtttgga |
46577204 |
T |
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| Q |
118 |
tgt |
120 |
Q |
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| T |
46577203 |
tgt |
46577201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 32160044 - 32160096
Alignment:
| Q |
134 |
attttgatttaggtggtttagtaaaattgattttaggtaaaagtgaatttaat |
186 |
Q |
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| T |
32160044 |
attttgatttagttagttttgtaaaattgattttaattaaaagtgagtttaat |
32160096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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