View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15420_low_9 (Length: 429)

Name: NF15420_low_9
Description: NF15420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15420_low_9
NF15420_low_9
[»] chr4 (6 HSPs)
chr4 (3-231)||(19657110-19657338)
chr4 (303-419)||(19657408-19657524)
chr4 (46-215)||(19874695-19874864)
chr4 (323-419)||(19532449-19532545)
chr4 (307-419)||(19875350-19875461)
chr4 (95-177)||(19532235-19532317)
[»] chr5 (5 HSPs)
chr5 (53-215)||(19894456-19894618)
chr5 (323-392)||(19894290-19894359)
chr5 (329-419)||(30890934-30891024)
chr5 (329-419)||(30895759-30895849)
chr5 (53-205)||(30890635-30890787)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 231
Target Start/End: Original strand, 19657110 - 19657338
Alignment:
Q  3 attctagcatatgtatgcggagatgctaaagaaggacatacacttttaagagagacaccattcaagatggatcaatccctaaaagagacctcaaaattag 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  19657110 attctagcatatgtatgcggagatgctaaagaaggacatacacttttaagagagacaccattcaagatggatcaatccctaaaagggacttcaaaattag 19657209  T
Q  103 acatacacacagaaatgaatttgttggagagaaaattagttgaactcaaagcaatgaatttggatgaaaatacaacgaaatgggcaatgaaagattatgg 202  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||    
T  19657210 acatacacacagaaatgaatttgttggagagaaaattaattgaactcaaagtaatgaatgcggatgaaaatacaacgaaatgggcaatgaaagattatgg 19657309  T
Q  203 aatgggaaggttcttcacattctaattgt 231  Q
    |||||||||||||||||||||||||||||    
T  19657310 aatgggaaggttcttcacattctaattgt 19657338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 303 - 419
Target Start/End: Original strand, 19657408 - 19657524
Alignment:
Q  303 tccggatttaaactatttataatgcaaaattagagcaaatttgcatggctggcctaatacatatacattcacaaaggcaatgggagagatgcttatagtg 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19657408 tccggatttaaactatttataatgcaaaattagagcaaatttgcatggctggcctaatacatatacattcacaaaggcaatgggagagatgcttttagtg 19657507  T
Q  403 catcataaagatgatgt 419  Q
    |||||||||||||||||    
T  19657508 catcataaagatgatgt 19657524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 46 - 215
Target Start/End: Original strand, 19874695 - 19874864
Alignment:
Q  46 ttttaagagagacaccattcaagatggatcaatccctaaaagagacctcaaaattagacatacacacagaaatgaatttgttggagagaaaattagttga 145  Q
    ||||| ||||||  |||||  |||||| | |||| ||||||| |||||||||||||||||||||   ||||||||||||||||||||||||||||| |||    
T  19874695 ttttacgagagaacccatttgagatgggtgaatctctaaaagggacctcaaaattagacatacatgaagaaatgaatttgttggagagaaaattagctga 19874794  T
Q  146 actcaaagcaatgaatttggatgaaaatacaacgaaatgggcaatgaaagattatggaatgggaaggttc 215  Q
    |||| ||||||||||| |||||||||||||||  | ||| |||||||| ||||||||||||| |||||||    
T  19874795 actccaagcaatgaatgtggatgaaaatacaataacatgtgcaatgaaggattatggaatggaaaggttc 19874864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 323 - 419
Target Start/End: Original strand, 19532449 - 19532545
Alignment:
Q  323 aatgcaaaattagagcaaatttgcatggctggcctaatacatatacattcacaaaggcaatgggagagatgcttatagtgcatcataaagatgatgt 419  Q
    |||||||||||||||||||||||||||| ||||| || ||||||  ||||||||| |||||||||||||||||| |||| |||||||||||| ||||    
T  19532449 aatgcaaaattagagcaaatttgcatggttggccaaacacatatgtattcacaaaagcaatgggagagatgcttttagttcatcataaagataatgt 19532545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 419
Target Start/End: Original strand, 19875350 - 19875461
Alignment:
Q  307 gatttaaactatttataatgcaaaattagagcaaatttgcatggctggcctaatacatatacattcacaaaggcaatgggagagatgcttatagtgcatc 406  Q
    |||||||||||| ||||| | ||||| |||||||||||| |||| ||||| ||||||||||| |||||||| |||||||| ||||||||| |||| ||||    
T  19875350 gatttaaactatatataacggaaaat-agagcaaatttgtatggttggccaaatacatatactttcacaaaagcaatgggggagatgcttttagttcatc 19875448  T
Q  407 ataaagatgatgt 419  Q
    |||||||| ||||    
T  19875449 ataaagataatgt 19875461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 19532235 - 19532317
Alignment:
Q  95 aaaattagacatacacacagaaatgaatttgttggagagaaaattagttgaactcaaagcaatgaatttggatgaaaatacaa 177  Q
    |||| |||||||||||||||||||||||||| |||||| |||||||| |||| |   |||||||||| |||||||||| ||||    
T  19532235 aaaactagacatacacacagaaatgaatttgctggagaaaaaattagatgaattacgagcaatgaatgtggatgaaaaaacaa 19532317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 53 - 215
Target Start/End: Complemental strand, 19894618 - 19894456
Alignment:
Q  53 agagacaccattcaagatggatcaatccctaaaagagacctcaaaattagacatacacacagaaatgaatttgttggagagaaaattagttgaactcaaa 152  Q
    ||||| ||||||  |||||| |||||||||||||| ||| |||||| |||||||||||||||||||||||||| |||||| |||||| | ||||||   |    
T  19894618 agagaaaccatttgagatgggtcaatccctaaaagggacttcaaaactagacatacacacagaaatgaatttgctggagaaaaaatttgatgaactacga 19894519  T
Q  153 gcaatgaatttggatgaaaatacaacgaaatgggcaatgaaagattatggaatgggaaggttc 215  Q
    ||||||||| |||||||||| ||    ||||  ||| |||||||||||||||| | |||||||    
T  19894518 gcaatgaatgtggatgaaaaaactctcaaatatgcattgaaagattatggaattgaaaggttc 19894456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 323 - 392
Target Start/End: Complemental strand, 19894359 - 19894290
Alignment:
Q  323 aatgcaaaattagagcaaatttgcatggctggcctaatacatatacattcacaaaggcaatgggagagat 392  Q
    |||||||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||    
T  19894359 aatgcaaaattagagcaaatttgcatggttggcctaacacatattcattcacaaaagcaatgggagagat 19894290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 419
Target Start/End: Original strand, 30890934 - 30891024
Alignment:
Q  329 aaattagagcaaatttgcatggctggcctaatacatatacattcacaaaggcaatgggagagatgcttatagtgcatcataaagatgatgt 419  Q
    |||||||||||||||||||||| ||||| || ||||||  ||||||||| ||||||||||| |||||| ||||  |||| |||||| ||||    
T  30890934 aaattagagcaaatttgcatggttggccaaacacatatgtattcacaaaagcaatgggagaaatgcttgtagtaaatcaaaaagataatgt 30891024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 419
Target Start/End: Original strand, 30895759 - 30895849
Alignment:
Q  329 aaattagagcaaatttgcatggctggcctaatacatatacattcacaaaggcaatgggagagatgcttatagtgcatcataaagatgatgt 419  Q
    |||||||||||||||||||||| ||||| || ||||||  ||||||||| ||||||||||| |||||| ||||  |||| |||||| ||||    
T  30895759 aaattagagcaaatttgcatggttggccaaacacatatgtattcacaaaagcaatgggagaaatgcttgtagtaaatcaaaaagataatgt 30895849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 205
Target Start/End: Original strand, 30890635 - 30890787
Alignment:
Q  53 agagacaccattcaagatggatcaatccctaaaagagacctcaaaattagacatacacacagaaatgaatttgttggagagaaaattagttgaactcaaa 152  Q
    ||||| ||||||  |||||| |||| |  ||||||  |||||||||||| |||| || ||||||||| |||||||||||| |||| ||| ||||||   |    
T  30890635 agagaaaccatttgagatgggtcaaactttaaaaggaacctcaaaattaaacattcaaacagaaatggatttgttggagaaaaaaatagatgaacttcga 30890734  T
Q  153 gcaatgaatttggatgaaaatacaacgaaatgggcaatgaaagattatggaat 205  Q
    |||||||||   |||||||  ||||  ||||  ||| ||||||||||||||||    
T  30890735 gcaatgaatgccgatgaaagcacaatcaaatatgcattgaaagattatggaat 30890787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University