View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15421_low_1 (Length: 369)
Name: NF15421_low_1
Description: NF15421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15421_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 86 - 230
Target Start/End: Original strand, 13695983 - 13696127
Alignment:
| Q |
86 |
acactttagagtttctacaaaatcacaaatttattttgatttcgccagattttgtacttatcttacaaactaacctcagagacaagcttgaatgcaattt |
185 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13695983 |
acactttggagtttctacaaaatcacaaatttattttgatttcgccagattttgtacttatcttacaaactaacctcagagacaagcttgaatgcaattt |
13696082 |
T |
|
| Q |
186 |
cagccttgggatgtttattcttatctggatgaagttgcaaggctg |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13696083 |
cagccttgggatgtttattcttatctggatgaagttgcaaggctg |
13696127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 13696211 - 13696265
Alignment:
| Q |
315 |
cataccaagtttatgatatttcttacgaatggtatttacacctgcattttcttcc |
369 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13696211 |
cataccaagtttatgatatttcttccgaatggtatttacacctgcattttcttcc |
13696265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 49928698 - 49928621
Alignment:
| Q |
152 |
aaactaacctcagagacaagcttgaatgcaatttcagccttgggatgtttattcttatctggatgaagttgcaaggct |
229 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||||| || |||||||| |||||||||||||||||||| |||||| |
|
|
| T |
49928698 |
aaactaacctcagaaacaagtttgaaggcaatttcagcttttggatgtttgttcttatctggatgaagttgtaaggct |
49928621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University