View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15421_low_4 (Length: 253)
Name: NF15421_low_4
Description: NF15421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15421_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 28465253 - 28465490
Alignment:
| Q |
1 |
agactataccagaaaacatatgcttgtactatacatccatatatggtgaaggtgtatgtgggtttaatagtatgtgcaccattacaaatgaccaaaggcc |
100 |
Q |
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| T |
28465253 |
agactataccagaaaacatatgcttgtactatacatccatatatggtgaaggtgtatgtgggtttaatagtatgtgcaccattacaaatgaccaaaggcc |
28465352 |
T |
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| Q |
101 |
aaattgtacctgcccagacgaatattctccgattgattcaaataacatgtatgctggttgcataccaaattttcaagttatctgtcaagcaggtgggaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28465353 |
aaattgtacctgcccagacgaatattctccgattgattcaaataacatgtatgctggttgcataccaaattttcaagttatctgtcaagcaggtgggaat |
28465452 |
T |
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| Q |
201 |
ttgagttcacaagataatctatatacaatgaaggagtt |
238 |
Q |
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| T |
28465453 |
ttgagttcacaagataatctatatacaatgaaggagtt |
28465490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 28487023 - 28487254
Alignment:
| Q |
1 |
agactataccagaaaacatatgcttgtactatacatccatatatggtgaaggtgtatgtgggtttaatagtatgtgcaccattacaaatgaccaaaggcc |
100 |
Q |
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|||||||||||||||||||||| ||||| | ||||| | | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28487023 |
agactataccagaaaacatatgtttgtattctacattccga---ggtgaaggtgtatgtgggtttaatagtatttgcaccattacaaatgaccaaaggcc |
28487119 |
T |
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| Q |
101 |
aaattgtacctgcccagacgaatattctccgattgattcaaataacatgtatgctggttgcataccaaattttcaagttatctgtcaagcaggtgggaat |
200 |
Q |
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| T |
28487120 |
aaattgtacctgcccagacgaatattcaccgattgattcaaataacatgtatgctggttgcataccaaattttcaagttatttgtcaagcaggtgggaat |
28487219 |
T |
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| Q |
201 |
ttgagttcacaagataatctatatacaatgaagga |
235 |
Q |
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| T |
28487220 |
ttgggtccacaagataatctatatacaatgaagga |
28487254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 28444404 - 28444638
Alignment:
| Q |
1 |
agactataccagaaaacatatgcttgtactatacatccatatatggtgaaggtgtatgtgggtttaatagtatgtgcaccattacaaatgaccaaaggcc |
100 |
Q |
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||||||| |||||||||||||||||||||| ||||| || | ||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||| |
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| T |
28444404 |
agactatcccagaaaacatatgcttgtactctacatacacaaatggtgaaggtgtatgtggctttaatagcatttgcactcttacaaatgaccaaaggcc |
28444503 |
T |
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| Q |
101 |
aaattgtacctgcccagacgaatattctccgattgattcaaataacatgtatgctggttgcataccaaattttcaagttatctgtcaagcaggtgggaat |
200 |
Q |
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| T |
28444504 |
taattgtacctgcccagttggatattctccgattgattcaaataacatgtatcttggttgcataccgaatttccaagttatttgtcaagcaggtggaaat |
28444603 |
T |
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| Q |
201 |
ttgagttcacaagataatctatatacaatgaagga |
235 |
Q |
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| T |
28444604 |
tgggattcacaaaaagatctatatacaatgaagga |
28444638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 28437282 - 28437365
Alignment:
| Q |
88 |
atgaccaaaggccaaattgtacctgcccagacgaatattctccgattgattcaaataacatgtatgctggttgcataccaaatt |
171 |
Q |
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| T |
28437282 |
atgaccaaaggccaatgtgtacttgtctagaaggatattctctaattgattcaaacaacatgtatggggattgcataccaaatt |
28437365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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