View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15421_low_6 (Length: 241)

Name: NF15421_low_6
Description: NF15421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15421_low_6
NF15421_low_6
[»] chr2 (3 HSPs)
chr2 (1-231)||(28464819-28465049)
chr2 (1-231)||(28486589-28486819)
chr2 (1-231)||(28443970-28444200)


Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 28465049 - 28464819
Alignment:
Q  1 tttgtttgattctcatcatcacttgtgccagatgtgtagtaaggatcataactatagttgcttggcaaatttataacgttaagtacaacatttccatcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  28465049 tttgtttgattctcatcatcacttgtgccagatgtgtagtaaggatcataactatagttgcttggcagatttataacgttaagtacaagatttccatcct 28464950  T
Q  101 cttgtagatgaaatttgaaccttccgtgtgagaagtttaacgctccttgccgtgaaaaaagattcccatttaactccattacttgattaggaactaatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28464949 cttgtagatgaaatttgaaccttccgtgtgagaagtttaacgctccttgccgtgaaaaaagattcccatttaactccattacttgattaggaactaatgt 28464850  T
Q  201 atccgtaggatgactgaaactgccccatatt 231  Q
    |||||||||||||||||||||| ||||||||    
T  28464849 atccgtaggatgactgaaactgtcccatatt 28464819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 28486819 - 28486589
Alignment:
Q  1 tttgtttgattctcatcatcacttgtgccagatgtgtagtaaggatcataactatagttgcttggcaaatttataacgttaagtacaacatttccatcct 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28486819 tttgtttgattctcatcatcacttgtgccagatttgtagtaaggatcataactatagttgcttggcaaatttataacgttaagtacaagatttccatcct 28486720  T
Q  101 cttgtagatgaaatttgaaccttccgtgtgagaagtttaacgctccttgccgtgaaaaaagattcccatttaactccattacttgattaggaactaatgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28486719 cttgtagatgaaatttgaaccttccgtgtgagaagtttaacgctccttgccgtgaaaaaagattcccatttaactccattacctgattaggaactaatgt 28486620  T
Q  201 atccgtaggatgactgaaactgccccatatt 231  Q
    |||||||||||||||||||||| ||||||||    
T  28486619 atccgtaggatgactgaaactgtcccatatt 28486589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 28444200 - 28443970
Alignment:
Q  1 tttgtttgattctcatcatcacttgtgccagatgtgtagtaaggatcataactatagttgcttggcaaatttataacgttaagtacaacatttccatcct 100  Q
    ||||||||||||| |  |||||| |||| ||   |||||||||| |  ||||| || |||||||||||||||| || ||| || |||| ||| |||||||    
T  28444200 tttgtttgattcttagaatcactggtgcgagcactgtagtaaggtttgtaactgtaattgcttggcaaatttacaaggttgagcacaagattcccatcct 28444101  T
Q  101 cttgtagatgaaatttgaaccttccgtgtgagaagtttaacgctccttgccgtgaaaaaagattcccatttaactccattacttgattaggaactaatgt 200  Q
    |||||||||||| ||| |||||||| ||||||||||| |||| |||||| | |||| ||||||| ||||| ||||||||||||||||| || ||||||||    
T  28444100 cttgtagatgaagtttaaaccttccttgtgagaagttgaacgatccttgtcttgaagaaagatttccattcaactccattacttgattcggcactaatgt 28444001  T
Q  201 atccgtaggatgactgaaactgccccatatt 231  Q
     || |||||||||||||||||  ||||||||    
T  28444000 gtcagtaggatgactgaaactatcccatatt 28443970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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