View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15422_high_11 (Length: 237)
Name: NF15422_high_11
Description: NF15422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15422_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 35966693 - 35966473
Alignment:
| Q |
17 |
accacatatgtaaataacagtacatcgacataacatactaattaaactcatcaaatatttactaacttagtttccaattcctctaacttctaattcctac |
116 |
Q |
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| T |
35966693 |
accacatgtgtaaacaacagtacatcgacataacatactaattaaactcatcaaatatttactaacttactttccaattcctctaacttctaattcctac |
35966594 |
T |
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| Q |
117 |
tcaagacccaatcaatttgtaacnnnnnnnttggtatagtcattgaatataaaaattatgtgttcgaaaactatttaatgagtatgaattagaagtcaga |
216 |
Q |
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| T |
35966593 |
tcaagacccaatcaatttgtaacaaaaaaattggtatagtcattgaatataaaaattatgtgttcgaaaaatatttaatgagtatgaattagaagtcaga |
35966494 |
T |
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| Q |
217 |
ggaattggaattaatttcaat |
237 |
Q |
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|||||||||| |||||||||| |
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| T |
35966493 |
ggaattggaactaatttcaat |
35966473 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 10495134 - 10495183
Alignment:
| Q |
72 |
tatttactaacttagtttccaattcctctaacttctaattcctactcaag |
121 |
Q |
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|||||||||||| | |||||||||||| | ||| |||||||||||||||| |
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| T |
10495134 |
tatttactaactcaatttccaattcctattactcctaattcctactcaag |
10495183 |
T |
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